Literature DB >> 27570183

Enhancer deregulation in cancer and other diseases.

Hans-Martin Herz1.   

Abstract

Mutations in enhancer-associated chromatin-modifying components and genomic alterations in non-coding regions of the genome occur frequently in cancer, and other diseases pointing to the importance of enhancer fidelity to ensure proper tissue homeostasis. In this review, I will use specific examples to discuss how mutations in chromatin-modifying factors might affect enhancer activity of disease-relevant genes. I will then consider direct evidence from single nucleotide polymorphisms, small insertions, or deletions but also larger genomic rearrangements such as duplications, deletions, translocations, and inversions of specific enhancers to demonstrate how they have the ability to impact enhancer activity of disease genes including oncogenes and tumor suppressor genes. Considering that the scientific community only fairly recently has begun to focus its attention on "enhancer malfunction" in disease, I propose that multiple new enhancer-regulated and disease-relevant processes will be uncovered in the near future that will constitute the mechanistic basis for novel therapeutic avenues.
© 2016 WILEY Periodicals, Inc.

Entities:  

Keywords:  Kabuki syndrome; MLL3/KMT2C; MLL4/KMT2D; UTX/KDM6A; cancer; enhancer deregulation; enhancer mutations and genomic alterations

Mesh:

Year:  2016        PMID: 27570183      PMCID: PMC5160997          DOI: 10.1002/bies.201600106

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  150 in total

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Authors:  Nathaniel D Heintzman; Rhona K Stuart; Gary Hon; Yutao Fu; Christina W Ching; R David Hawkins; Leah O Barrera; Sara Van Calcar; Chunxu Qu; Keith A Ching; Wei Wang; Zhiping Weng; Roland D Green; Gregory E Crawford; Bing Ren
Journal:  Nat Genet       Date:  2007-02-04       Impact factor: 38.330

2.  Super-enhancers in the control of cell identity and disease.

Authors:  Denes Hnisz; Brian J Abraham; Tong Ihn Lee; Ashley Lau; Violaine Saint-André; Alla A Sigova; Heather A Hoke; Richard A Young
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3.  Identification of a hot spot for microdeletions in patients with X-linked deafness type 3 (DFN3) 900 kb proximal to the DFN3 gene POU3F4.

Authors:  Y J de Kok; E R Vossenaar; C W Cremers; N Dahl; J Laporte; L J Hu; D Lacombe; N Fischel-Ghodsian; R A Friedman; L S Parnes; P Thorpe; M Bitner-Glindzicz; H J Pander; H Heilbronner; J Graveline; J T den Dunnen; H G Brunner; H H Ropers; F P Cremers
Journal:  Hum Mol Genet       Date:  1996-09       Impact factor: 6.150

4.  Enhancer-associated H3K4 monomethylation by Trithorax-related, the Drosophila homolog of mammalian Mll3/Mll4.

Authors:  Hans-Martin Herz; Man Mohan; Alexander S Garruss; Kaiwei Liang; Yoh-Hei Takahashi; Kristen Mickey; Olaf Voets; C Peter Verrijzer; Ali Shilatifard
Journal:  Genes Dev       Date:  2012-11-19       Impact factor: 11.361

5.  Frequent mutations of chromatin remodeling gene ARID1A in ovarian clear cell carcinoma.

Authors:  Siân Jones; Tian-Li Wang; Ie-Ming Shih; Tsui-Lien Mao; Kentaro Nakayama; Richard Roden; Ruth Glas; Dennis Slamon; Luis A Diaz; Bert Vogelstein; Kenneth W Kinzler; Victor E Velculescu; Nickolas Papadopoulos
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6.  High-resolution genomic profiling of chronic lymphocytic leukemia reveals new recurrent genomic alterations.

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Journal:  Blood       Date:  2012-10-09       Impact factor: 22.113

7.  EGFR variant heterogeneity in glioblastoma resolved through single-nucleus sequencing.

Authors:  Joshua M Francis; Cheng-Zhong Zhang; Cecile L Maire; Joonil Jung; Veronica E Manzo; Viktor A Adalsteinsson; Heather Homer; Sam Haidar; Brendan Blumenstiel; Chandra Sekhar Pedamallu; Azra H Ligon; J Christopher Love; Matthew Meyerson; Keith L Ligon
Journal:  Cancer Discov       Date:  2014-06-03       Impact factor: 39.397

8.  Chromosome-wide mapping of DNA methylation patterns in normal and malignant prostate cells reveals pervasive methylation of gene-associated and conserved intergenic sequences.

Authors:  Srinivasan Yegnasubramanian; Zhijin Wu; Michael C Haffner; David Esopi; Martin J Aryee; Raghav Badrinath; Tony L He; James D Morgan; Benilton Carvalho; Qizhi Zheng; Angelo M De Marzo; Rafael A Irizarry; William G Nelson
Journal:  BMC Genomics       Date:  2011-06-13       Impact factor: 3.969

9.  Recurrent somatic mutations in regulatory regions of human cancer genomes.

Authors:  Collin Melton; Jason A Reuter; Damek V Spacek; Michael Snyder
Journal:  Nat Genet       Date:  2015-06-08       Impact factor: 38.330

10.  Role of Tet proteins in enhancer activity and telomere elongation.

Authors:  Falong Lu; Yuting Liu; Lan Jiang; Shinpei Yamaguchi; Yi Zhang
Journal:  Genes Dev       Date:  2014-09-15       Impact factor: 11.361

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  33 in total

1.  Genetic Predisposition to Glioma Mediated by a MAPKAP1 Enhancer Variant.

Authors:  Liming Huang; Wenshen Xu; Danfang Yan; Xin You; Xi Shi; Shu Zhang; Hualan Hong; Lian Dai
Journal:  Cell Mol Neurobiol       Date:  2019-11-26       Impact factor: 5.046

2.  Thyroid Carcinomas That Occur in Familial Adenomatous Polyposis Patients Recurrently Harbor Somatic Variants in APC, BRAF, and KTM2D.

Authors:  Taina T Nieminen; Christopher J Walker; Alisa Olkinuora; Luke K Genutis; Margaret O'Malley; Paul E Wakely; Lisa LaGuardia; Laura Koskenvuo; Johanna Arola; Anna H Lepistö; Pamela Brock; Ayse Selen Yilmaz; Ann-Kathrin Eisfeld; James M Church; Päivi Peltomäki; Albert de la Chapelle
Journal:  Thyroid       Date:  2020-03       Impact factor: 6.568

Review 3.  Gene regulation in the 3D genome.

Authors:  Yun Li; Ming Hu; Yin Shen
Journal:  Hum Mol Genet       Date:  2018-08-01       Impact factor: 6.150

4.  The role of enhancer RNAs in epigenetic regulation of gene expression.

Authors:  Homa Rahnamoun; Paola Orozco; Shannon M Lauberth
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5.  The MLL3/4 complexes and MiDAC co-regulate H4K20ac to control a specific gene expression program.

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Journal:  Life Sci Alliance       Date:  2022-07-12

Review 6.  Enhancer reprogramming in tumor progression: a new route towards cancer cell plasticity.

Authors:  Luca Fagnocchi; Vittoria Poli; Alessio Zippo
Journal:  Cell Mol Life Sci       Date:  2018-04-24       Impact factor: 9.261

7.  Epidermal growth factor receptor-dependent DNA repair promotes murine and human hematopoietic regeneration.

Authors:  Tiancheng Fang; Yurun Zhang; Vivian Y Chang; Martina Roos; Christina M Termini; Lia Signaevskaia; Mamle Quarmyne; Paulina K Lin; Amara Pang; Jenny Kan; Xiao Yan; Anna Javier; Katherine Pohl; Liman Zhao; Peter Scott; Heather A Himburg; John P Chute
Journal:  Blood       Date:  2020-07-23       Impact factor: 22.113

Review 8.  Deregulation of enhancer structure, function, and dynamics in acute lymphoblastic leukemia.

Authors:  Laura Belver; Robert Albero; Adolfo A Ferrando
Journal:  Trends Immunol       Date:  2021-04-12       Impact factor: 16.687

9.  Identification and validation of transcription factor-driven enhancers of genes related to lipid metabolism in metastatic oral squamous cell carcinomas.

Authors:  Liru Zhang; Shuangling Zhao; Yuanhang Liu; Feifei Lv; Xixue Geng
Journal:  BMC Oral Health       Date:  2022-04-15       Impact factor: 3.747

10.  HEDD: Human Enhancer Disease Database.

Authors:  Zhen Wang; Quanwei Zhang; Wen Zhang; Jhih-Rong Lin; Ying Cai; Joydeep Mitra; Zhengdong D Zhang
Journal:  Nucleic Acids Res       Date:  2018-01-04       Impact factor: 16.971

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