Literature DB >> 27040487

Endogenous microRNA sponges: evidence and controversy.

Daniel W Thomson1,2, Marcel E Dinger1,2.   

Abstract

The competitive endogenous RNA (ceRNA) hypothesis proposes that transcripts with shared microRNA (miRNA) binding sites compete for post-transcriptional control. This hypothesis has gained substantial attention as a unifying function for long non-coding RNAs, pseudogene transcripts and circular RNAs, as well as an alternative function for messenger RNAs. Empirical evidence supporting the hypothesis is accumulating but not without attracting scepticism. Recent studies that model transcriptome-wide binding-site abundance suggest that physiological changes in expression of most individual transcripts will not compromise miRNA activity. In this Review, we critically evaluate the evidence for and against the ceRNA hypothesis to assess the impact of endogenous miRNA-sponge interactions.

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Year:  2016        PMID: 27040487     DOI: 10.1038/nrg.2016.20

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  144 in total

Review 1.  Experimental validation of miRNA targets.

Authors:  Donald E Kuhn; Mickey M Martin; David S Feldman; Alvin V Terry; Gerard J Nuovo; Terry S Elton
Journal:  Methods       Date:  2008-01       Impact factor: 3.608

2.  Modulation of lipoprotein metabolism by antisense technology: preclinical drug discovery methodology.

Authors:  Rosanne M Crooke; Mark J Graham
Journal:  Methods Mol Biol       Date:  2013

Review 3.  Competition between target sites of regulators shapes post-transcriptional gene regulation.

Authors:  Marvin Jens; Nikolaus Rajewsky
Journal:  Nat Rev Genet       Date:  2014-12-09       Impact factor: 53.242

4.  Endogenous miRNA sponge lincRNA-RoR regulates Oct4, Nanog, and Sox2 in human embryonic stem cell self-renewal.

Authors:  Yue Wang; Zhenyu Xu; Junfeng Jiang; Chen Xu; Jiuhong Kang; Lei Xiao; Minjuan Wu; Jun Xiong; Xiaocan Guo; Houqi Liu
Journal:  Dev Cell       Date:  2013-03-28       Impact factor: 12.270

5.  Detecting and characterizing circular RNAs.

Authors:  William R Jeck; Norman E Sharpless
Journal:  Nat Biotechnol       Date:  2014-05       Impact factor: 54.908

Review 6.  The multilayered complexity of ceRNA crosstalk and competition.

Authors:  Yvonne Tay; John Rinn; Pier Paolo Pandolfi
Journal:  Nature       Date:  2014-01-16       Impact factor: 49.962

7.  Selective degradation of host MicroRNAs by an intergenic HCMV noncoding RNA accelerates virus production.

Authors:  Sanghyun Lee; Jaewon Song; Sungchul Kim; Jongkyu Kim; Yujin Hong; Youngkyun Kim; Donghyun Kim; Daehyun Baek; Kwangseog Ahn
Journal:  Cell Host Microbe       Date:  2013-06-12       Impact factor: 21.023

8.  Evidence for conserved post-transcriptional roles of unitary pseudogenes and for frequent bifunctionality of mRNAs.

Authors:  Ana C Marques; Jennifer Tan; Sheena Lee; Lesheng Kong; Andreas Heger; Chris P Ponting
Journal:  Genome Biol       Date:  2012-11-15       Impact factor: 13.583

9.  The GENCODE pseudogene resource.

Authors:  Baikang Pei; Cristina Sisu; Adam Frankish; Cédric Howald; Lukas Habegger; Xinmeng Jasmine Mu; Rachel Harte; Suganthi Balasubramanian; Andrea Tanzer; Mark Diekhans; Alexandre Reymond; Tim J Hubbard; Jennifer Harrow; Mark B Gerstein
Journal:  Genome Biol       Date:  2012-09-26       Impact factor: 13.583

10.  starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data.

Authors:  Jun-Hao Li; Shun Liu; Hui Zhou; Liang-Hu Qu; Jian-Hua Yang
Journal:  Nucleic Acids Res       Date:  2013-12-01       Impact factor: 16.971

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  699 in total

Review 1.  Characteristics of circular RNAs generated by human Survival Motor Neuron genes.

Authors:  Eric W Ottesen; Ravindra N Singh
Journal:  Cell Signal       Date:  2020-06-15       Impact factor: 4.315

2.  The long non-coding RNA SUMO1P3 facilitates breast cancer progression by negatively regulating miR-320a.

Authors:  Jie Liu; Zhiwang Song; Chan Feng; Yonglin Lu; Yu Zhou; Yun Lin; Chunyan Dong
Journal:  Am J Transl Res       Date:  2017-12-15       Impact factor: 4.060

Review 3.  CCAT1: an oncogenic long noncoding RNA in human cancers.

Authors:  Xiaoqiang Guo; Yuming Hua
Journal:  J Cancer Res Clin Oncol       Date:  2016-09-16       Impact factor: 4.553

4.  Long non-coding RNA RNCR3 promotes prostate cancer progression through targeting miR-185-5p.

Authors:  Chuang Tian; Yuanyuan Deng; Yong Jin; Songshan Shi; Hai Bi
Journal:  Am J Transl Res       Date:  2018-05-15       Impact factor: 4.060

5.  CircNAPEPLD is expressed in human and murine spermatozoa and physically interacts with oocyte miRNAs.

Authors:  Marco Ragusa; Davide Barbagallo; Teresa Chioccarelli; Francesco Manfrevola; Gilda Cobellis; Cinzia Di Pietro; Duilia Brex; Rosalia Battaglia; Silvia Fasano; Bruno Ferraro; Carolina Sellitto; Concetta Ambrosino; Luca Roberto; Michele Purrello; Riccardo Pierantoni; Rosanna Chianese
Journal:  RNA Biol       Date:  2019-06-14       Impact factor: 4.652

6.  LncRNA OSER1-AS1 interacts with miR-612/FOXM1 axis to modulate gefitinib resistance of lung adenocarcinoma.

Authors:  Tingting Shi; Weijuan Sun; Yan-Long Shi; Qiang Wang; Ze-Xuan Yan; Mei Zhang
Journal:  Am J Transl Res       Date:  2021-03-15       Impact factor: 4.060

7.  Argonaute CLIP Defines a Deregulated miR-122-Bound Transcriptome that Correlates with Patient Survival in Human Liver Cancer.

Authors:  Joseph M Luna; Juan M Barajas; Kun-Yu Teng; Hui-Lung Sun; Michael J Moore; Charles M Rice; Robert B Darnell; Kalpana Ghoshal
Journal:  Mol Cell       Date:  2017-07-20       Impact factor: 17.970

Review 8.  A network-biology perspective of microRNA function and dysfunction in cancer.

Authors:  Cameron P Bracken; Hamish S Scott; Gregory J Goodall
Journal:  Nat Rev Genet       Date:  2016-10-31       Impact factor: 53.242

9.  MicroRNA-409-5p promotes retinal neovascularization in diabetic retinopathy.

Authors:  Ying Wang; Wenwen Lin; Jianghua Ju
Journal:  Cell Cycle       Date:  2020-04-15       Impact factor: 4.534

Review 10.  Non-coding transcript variants of protein-coding genes - what are they good for?

Authors:  Sonam Dhamija; Manoj B Menon
Journal:  RNA Biol       Date:  2018-09-10       Impact factor: 4.652

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