Literature DB >> 32553550

Characteristics of circular RNAs generated by human Survival Motor Neuron genes.

Eric W Ottesen1, Ravindra N Singh2.   

Abstract

Circular RNAs (circRNAs) belong to a diverse class of stable RNAs expressed in all cell types. Their proposed functions include sponging of microRNAs (miRNAs), sequestration and trafficking of proteins, assembly of multimeric complexes, production of peptides, and regulation of transcription. Backsplicing due to RNA structures formed by an exceptionally high number of Alu repeats lead to the production of a vast repertoire of circRNAs by human Survival Motor Neuron genes, SMN1 and SMN2, that code for SMN, an essential multifunctional protein. Low levels of SMN due to deletion or mutation of SMN1 result in spinal muscular atrophy (SMA), a major genetic disease of infants and children. Mild SMA is also recorded in adult population, expanding the spectrum of the disease. Here we review SMN circRNAs with respect to their biogenesis, sequence features, and potential functions. We also discuss how SMN circRNAs could be exploited for diagnostic and therapeutic purposes.
Copyright © 2020 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Alu elements; Backsplicing; Spinal muscular atrophy, SMA; Survival motor neuron, SMN; circRNA; microRNA

Year:  2020        PMID: 32553550      PMCID: PMC7387165          DOI: 10.1016/j.cellsig.2020.109696

Source DB:  PubMed          Journal:  Cell Signal        ISSN: 0898-6568            Impact factor:   4.315


  116 in total

1.  Minimal conditions for exonization of intronic sequences: 5' splice site formation in alu exons.

Authors:  Rotem Sorek; Galit Lev-Maor; Mika Reznik; Tal Dagan; Frida Belinky; Dan Graur; Gil Ast
Journal:  Mol Cell       Date:  2004-04-23       Impact factor: 17.970

2.  DHX9 suppresses RNA processing defects originating from the Alu invasion of the human genome.

Authors:  Tuğçe Aktaş; İbrahim Avşar Ilık; Daniel Maticzka; Vivek Bhardwaj; Cecilia Pessoa Rodrigues; Gerhard Mittler; Thomas Manke; Rolf Backofen; Asifa Akhtar
Journal:  Nature       Date:  2017-03-29       Impact factor: 49.962

Review 3.  Advances in therapeutic development for spinal muscular atrophy.

Authors:  Matthew D Howell; Natalia N Singh; Ravindra N Singh
Journal:  Future Med Chem       Date:  2014-06       Impact factor: 3.808

4.  The survival motor neuron protein forms soluble glycine zipper oligomers.

Authors:  Renee Martin; Kushol Gupta; Nisha S Ninan; Kay Perry; Gregory D Van Duyne
Journal:  Structure       Date:  2012-09-27       Impact factor: 5.006

Review 5.  How the discovery of ISS-N1 led to the first medical therapy for spinal muscular atrophy.

Authors:  N N Singh; M D Howell; E J Androphy; R N Singh
Journal:  Gene Ther       Date:  2017-05-09       Impact factor: 5.250

6.  Disruption of an SF2/ASF-dependent exonic splicing enhancer in SMN2 causes spinal muscular atrophy in the absence of SMN1.

Authors:  Luca Cartegni; Adrian R Krainer
Journal:  Nat Genet       Date:  2002-03-04       Impact factor: 38.330

7.  Splicing of a critical exon of human Survival Motor Neuron is regulated by a unique silencer element located in the last intron.

Authors:  Nirmal K Singh; Natalia N Singh; Elliot J Androphy; Ravindra N Singh
Journal:  Mol Cell Biol       Date:  2006-02       Impact factor: 4.272

Review 8.  IGF2 mRNA-binding protein 2: biological function and putative role in type 2 diabetes.

Authors:  Jan Christiansen; Astrid M Kolte; Thomas v O Hansen; Finn C Nielsen
Journal:  J Mol Endocrinol       Date:  2009-05-08       Impact factor: 5.098

9.  Dynamics of survival of motor neuron (SMN) protein interaction with the mRNA-binding protein IMP1 facilitates its trafficking into motor neuron axons.

Authors:  Jeremy P Rouanet; Paul G Donlin-Asp; Claudia Fallini; Peng Guo; Honglai Zhang; Robert H Singer; Wilfried Rossoll; Gary J Bassell
Journal:  Dev Neurobiol       Date:  2013-10-04       Impact factor: 3.964

Review 10.  Pick one, but be quick: 5' splice sites and the problems of too many choices.

Authors:  Xavier Roca; Adrian R Krainer; Ian C Eperon
Journal:  Genes Dev       Date:  2013-01-15       Impact factor: 11.361

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  6 in total

Review 1.  R-loop Mediated DNA Damage and Impaired DNA Repair in Spinal Muscular Atrophy.

Authors:  Juliana Cuartas; Laxman Gangwani
Journal:  Front Cell Neurosci       Date:  2022-06-16       Impact factor: 6.147

2.  Comprehensive In Silico Analysis of Retrotransposon Insertions within the Survival Motor Neuron Genes Involved in Spinal Muscular Atrophy.

Authors:  Albano Pinto; Catarina Cunha; Raquel Chaves; Matthew E R Butchbach; Filomena Adega
Journal:  Biology (Basel)       Date:  2022-05-27

Review 3.  Structural Context of a Critical Exon of Spinal Muscular Atrophy Gene.

Authors:  Natalia N Singh; Collin A O'Leary; Taylor Eich; Walter N Moss; Ravindra N Singh
Journal:  Front Mol Biosci       Date:  2022-07-01

Review 4.  Spinal muscular atrophy: Broad disease spectrum and sex-specific phenotypes.

Authors:  Natalia N Singh; Shaine Hoffman; Prabhakara P Reddi; Ravindra N Singh
Journal:  Biochim Biophys Acta Mol Basis Dis       Date:  2021-01-05       Impact factor: 5.187

Review 5.  The First Orally Deliverable Small Molecule for the Treatment of Spinal Muscular Atrophy.

Authors:  Ravindra N Singh; Eric W Ottesen; Natalia N Singh
Journal:  Neurosci Insights       Date:  2020-11-23

6.  Internal Introns Promote Backsplicing to Generate Circular RNAs from Spinal Muscular Atrophy Gene.

Authors:  Diou Luo; Natalia Nikolaevna Singh; Ravindra Narayan Singh
Journal:  Genes (Basel)       Date:  2022-06-25       Impact factor: 4.141

  6 in total

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