| Literature DB >> 27023174 |
J Costas1, N Carrera2,3, P Alonso4,5,6,7, X Gurriarán1,8, C Segalàs4,5,6, E Real4,5,6, C López-Solà4,5,6, S Mas6,9,10, P Gassó9,10,11, L Domènech12,13,14,15, M Morell12,13,14,15, I Quintela16,17, L Lázaro6,10,11,18, J M Menchón4,5,6,7, X Estivill12,13,14,15, Á Carracedo3,16,17.
Abstract
Common single-nucleotide polymorphisms (SNPs) account for a large proportion of the heritability of obsessive-compulsive disorder (OCD). Co-ocurrence of OCD and schizophrenia is commoner than expected based on their respective prevalences, complicating the clinical management of patients. This study addresses two main objectives: to identify particular genes associated with OCD by SNP-based and gene-based tests; and to test the existence of a polygenic risk shared with schizophrenia. The primary analysis was an exon-focused genome-wide association study of 370 OCD cases and 443 controls from Spain. A polygenic risk model based on the Psychiatric Genetics Consortium schizophrenia data set (PGC-SCZ2) was tested in our OCD data. A polygenic risk model based on our OCD data was tested on previous data of schizophrenia from our group. The most significant association at the gene-based test was found at DNM3 (P=7.9 × 10(-5)), a gene involved in synaptic vesicle endocytosis. The polygenic risk model from PGC-SCZ2 data was strongly associated with disease status in our OCD sample, reaching its most significant value after removal of the major histocompatibility complex region (lowest P=2.3 × 10(-6), explaining 3.7% of the variance). The shared polygenic risk was confirmed in our schizophrenia data. In conclusion, DNM3 may be involved in risk to OCD. The shared polygenic risk between schizophrenia and OCD may be partially responsible for the frequent comorbidity of both disorders, explaining epidemiological data on cross-disorder risk. This common etiology may have clinical implications.Entities:
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Year: 2016 PMID: 27023174 PMCID: PMC4872458 DOI: 10.1038/tp.2016.34
Source DB: PubMed Journal: Transl Psychiatry ISSN: 2158-3188 Impact factor: 6.222
Figure 1Quantile-quantile plot of the observed versus expected statistic of the OCD study. OCD, obsessive-compulsive disorder.
Figure 2Manhattan plot of genetic associations with OCD showing significance by genomic location. OCD, obsessive-compulsive disorder.
Association results for the most significant SNP at those regions with minimal P<1 × 10−4
| P- | ||||||
|---|---|---|---|---|---|---|
| rs12151009 | 19:46141845 | C/T | 0.14 (C) | 0.50 (0.37–0.68) | 1.34 × 10−5 | |
| rs12327049 | 18:72260234 | C/T | 0.20 (C) | 0.56 (0.43–0.73) | 2.06 × 10−5 | |
| rs11685700 | 2:71162996 | A/G | 0.44 (A) | 1.58 (1.28–1.96) | 2.40 × 10−5 | |
| rs198841 | 6:26111671 | G/T | 0.45 (G) | 1.56 (1.26–192) | 3.27 × 10−5 | MHC, telomeric edge extended class I subregion |
| rs9523762 | 13:93331886 | A/G | 0.41 (A) | 0.66 (0.54–0.81) | 6.23 × 10−5 | |
| rs114371521 | 6:29717380 | C/T | 0.27 (C) | 0.59 (0.45–0.76) | 7.58 × 10−5 | MHC, extended class I subregion/classical class I subregion boundary |
Abbreviations: Chr, chromosome; CI, confidence interval; MAF, minor allele frequency; MDS, multidimensional scaling; MHC, major histocompatibility complex; OR, odds ratio; SNP, single-nucleotide polymorphism.
Based on logistic regression using 10 MDS dimensions as covariates.
Association results for SNPs at DNM3
| P | ||||||
|---|---|---|---|---|---|---|
| rs10914144 | 171.949.750 | T/C | 0.16 (T) | 0.70 (0.53–0.91) | 0.0081 | |
| rs17346452 | 172.053.287 | T/C | 0.28 (C) | 1.10 (0.88–1.37) | 0.41 | |
| rs678962 | 172.189.889 | T/G | 0.22 (G) | 1.41 (1.11–1.79) | 0.0047 | rs4916245 (0.21) |
| rs4916245 | 172.206.026 | G/A | 0.43 (A) | 0.70 (0.57–0.86) | 0.00078 | rs678962 (0.21) |
| rs1011731 | 172.346.548 | G/A | 0.38 (G) | 1.26 (1.03–1.55) | 0.026 |
Abbreviations: Chr, chromosome; CI, confidence interval; LD, linkage disequilibrium; MAF, minor allele frequency; MDS, multidimensional scaling; OR, odds ratio; SNP, single-nucleotide polymorphism.
Based on logistic regression using 10 MDS dimensions as covariates.
r2 values higher than 0.05 are present.
Figure 3Results of the polygenic risk score analysis using the PGC-SCZ2 data as the discovery sample and OCD data as target sample. The x axis represents the different Pthreshold. Significance of the score is shown above each column. The y axis represents the percentage of variance explained on the observed scale (Nagelkerke's pseudo-R2). (a) Values including the extended MHC region. (b) Values after removing the extended MHC region. MHC, major histocompatibility complex; OCD, obsessive-compulsive disorder; PGC-SCZ2, Psychiatric Genetics Consortium schizophrenia data set.