Literature DB >> 27001729

Modular synthesis of N-glycans and arrays for the hetero-ligand binding analysis of HIV antibodies.

Sachin S Shivatare1,2,3,4, Shih-Huang Chang1,3, Tsung-I Tsai5, Susan Yu Tseng1, Vidya S Shivatare1, Yih-Shyan Lin4, Yang-Yu Cheng1, Chien-Tai Ren1, Chang-Chun David Lee1, Sujeet Pawar1,2, Charng-Sheng Tsai4, Hao-Wei Shih4, Yi-Fang Zeng4, Chi-Hui Liang1,5, Peter D Kwong6, Dennis R Burton5, Chung-Yi Wu1, Chi-Huey Wong1,5.   

Abstract

A new class of broadly neutralizing antibodies (bNAbs) from HIV donors has been reported to target the glycans on gp120--a glycoprotein found on the surface of the virus envelope--thus renewing hope of developing carbohydrate-based HIV vaccines. However, the version of gp120 used in previous studies was not from human T cells and so the glycosylation pattern could be somewhat different to that found in the native system. Moreover, some antibodies recognized two different glycans simultaneously and this cannot be detected with the commonly used glycan microarrays on glass slides. Here, we have developed a glycan microarray on an aluminium-oxide-coated glass slide containing a diverse set of glycans, including homo- and mixed N-glycans (high-mannose, hybrid and complex types) that were prepared by modular chemo-enzymatic methods to detect the presence of hetero-glycan binding behaviours. This new approach allows rapid screening and identification of optimal glycans recognized by neutralizing antibodies, and could speed up the development of HIV-1 vaccines targeting cell surface glycans.

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Year:  2016        PMID: 27001729      PMCID: PMC4806563          DOI: 10.1038/nchem.2463

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.427


  57 in total

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Authors:  Marie Pancera; Jason S McLellan; Xueling Wu; Jiang Zhu; Anita Changela; Stephen D Schmidt; Yongping Yang; Tongqing Zhou; Sanjay Phogat; John R Mascola; Peter D Kwong
Journal:  J Virol       Date:  2010-06-10       Impact factor: 5.103

Review 2.  Carbohydrate vaccines: developing sweet solutions to sticky situations?

Authors:  Rena D Astronomo; Dennis R Burton
Journal:  Nat Rev Drug Discov       Date:  2010-04       Impact factor: 84.694

3.  Rational design of envelope identifies broadly neutralizing human monoclonal antibodies to HIV-1.

Authors:  Xueling Wu; Zhi-Yong Yang; Yuxing Li; Carl-Magnus Hogerkorp; William R Schief; Michael S Seaman; Tongqing Zhou; Stephen D Schmidt; Lan Wu; Ling Xu; Nancy S Longo; Krisha McKee; Sijy O'Dell; Mark K Louder; Diane L Wycuff; Yu Feng; Martha Nason; Nicole Doria-Rose; Mark Connors; Peter D Kwong; Mario Roederer; Richard T Wyatt; Gary J Nabel; John R Mascola
Journal:  Science       Date:  2010-07-08       Impact factor: 47.728

Review 4.  Glycan microarrays for decoding the glycome.

Authors:  Cory D Rillahan; James C Paulson
Journal:  Annu Rev Biochem       Date:  2011       Impact factor: 23.643

5.  Printed covalent glycan array for ligand profiling of diverse glycan binding proteins.

Authors:  Ola Blixt; Steve Head; Tony Mondala; Christopher Scanlan; Margaret E Huflejt; Richard Alvarez; Marian C Bryan; Fabio Fazio; Daniel Calarese; James Stevens; Nahid Razi; David J Stevens; John J Skehel; Irma van Die; Dennis R Burton; Ian A Wilson; Richard Cummings; Nicolai Bovin; Chi-Huey Wong; James C Paulson
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-24       Impact factor: 11.205

Review 6.  Sweet spots in functional glycomics.

Authors:  James C Paulson; Ola Blixt; Brian E Collins
Journal:  Nat Chem Biol       Date:  2006-05       Impact factor: 15.040

7.  Structural basis for diverse N-glycan recognition by HIV-1-neutralizing V1-V2-directed antibody PG16.

Authors:  Marie Pancera; Syed Shahzad-Ul-Hussan; Nicole A Doria-Rose; Jason S McLellan; Robert T Bailer; Kaifan Dai; Sandra Loesgen; Mark K Louder; Ryan P Staupe; Yongping Yang; Baoshan Zhang; Robert Parks; Joshua Eudailey; Krissey E Lloyd; Julie Blinn; S Munir Alam; Barton F Haynes; Mohammed N Amin; Lai-Xi Wang; Dennis R Burton; Wayne C Koff; Gary J Nabel; John R Mascola; Carole A Bewley; Peter D Kwong
Journal:  Nat Struct Mol Biol       Date:  2013-05-26       Impact factor: 15.369

8.  Broad neutralization coverage of HIV by multiple highly potent antibodies.

Authors:  Laura M Walker; Michael Huber; Katie J Doores; Emilia Falkowska; Robert Pejchal; Jean-Philippe Julien; Sheng-Kai Wang; Alejandra Ramos; Po-Ying Chan-Hui; Matthew Moyle; Jennifer L Mitcham; Phillip W Hammond; Ole A Olsen; Pham Phung; Steven Fling; Chi-Huey Wong; Sanjay Phogat; Terri Wrin; Melissa D Simek; Wayne C Koff; Ian A Wilson; Dennis R Burton; Pascal Poignard
Journal:  Nature       Date:  2011-09-22       Impact factor: 49.962

9.  Cell- and Protein-Directed Glycosylation of Native Cleaved HIV-1 Envelope.

Authors:  Laura K Pritchard; David J Harvey; Camille Bonomelli; Max Crispin; Katie J Doores
Journal:  J Virol       Date:  2015-06-17       Impact factor: 5.103

10.  Efficient Chemoenzymatic Synthesis of an N-glycan Isomer Library.

Authors:  Lei Li; Yunpeng Liu; Cheng Ma; Jingyao Qu; Angie D Calderon; Baolin Wu; Na Wei; Xuan Wang; Yuxi Guo; Zhongying Xiao; Jing Song; Go Sugiarto; Yanhong Li; Hai Yu; Xi Chen; Peng George Wang
Journal:  Chem Sci       Date:  2015-06-23       Impact factor: 9.825

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  32 in total

Review 1.  Oligosaccharide Synthesis and Translational Innovation.

Authors:  Larissa Krasnova; Chi-Huey Wong
Journal:  J Am Chem Soc       Date:  2019-02-18       Impact factor: 15.419

2.  Glycans Function as Anchors for Antibodies and Help Drive HIV Broadly Neutralizing Antibody Development.

Authors:  Raiees Andrabi; Ching-Yao Su; Chi-Hui Liang; Sachin S Shivatare; Bryan Briney; James E Voss; Salar Khan Nawazi; Chung-Yi Wu; Chi-Huey Wong; Dennis R Burton
Journal:  Immunity       Date:  2017-09-12       Impact factor: 31.745

3.  Chemoenzymatic Approach for the Preparation of Asymmetric Bi-, Tri-, and Tetra-Antennary N-Glycans from a Common Precursor.

Authors:  Ivan A Gagarinov; Tiehai Li; Javier Sastre Toraño; Tomislav Caval; Apoorva D Srivastava; John A W Kruijtzer; Albert J R Heck; Geert-Jan Boons
Journal:  J Am Chem Soc       Date:  2017-01-06       Impact factor: 15.419

4.  Redox-Controlled Site-Specific α2-6-Sialylation.

Authors:  Na Lu; Jinfeng Ye; Jiansong Cheng; Aniruddha Sasmal; Chang-Cheng Liu; Wenlong Yao; Jun Yan; Naazneen Khan; Wen Yi; Ajit Varki; Hongzhi Cao
Journal:  J Am Chem Soc       Date:  2019-03-11       Impact factor: 15.419

5.  Microarray analyses of closely related glycoforms reveal different accessibilities of glycan determinants on N-glycan branches.

Authors:  Lei Li; Wanyi Guan; Gaolan Zhang; Zhigang Wu; Hai Yu; Xi Chen; Peng G Wang
Journal:  Glycobiology       Date:  2020-04-20       Impact factor: 4.313

6.  An enzymatic strategy to asymmetrically branched N-glycans.

Authors:  Angie D Calderon; Jun Zhou; Wanyi Guan; Zhigang Wu; Yuxi Guo; Jing Bai; Qing Li; Peng George Wang; Junqiang Fang; Lei Li
Journal:  Org Biomol Chem       Date:  2017-09-13       Impact factor: 3.876

7.  Chemo-enzymatic Synthesis of N-glycans for Array Development and HIV Antibody Profiling.

Authors:  Sachin S Shivatare; Vidya S Shivatare; Chung-Yi Wu; Chi-Huey Wong
Journal:  J Vis Exp       Date:  2018-02-05       Impact factor: 1.355

8.  Synthetic multivalent V3 glycopeptides display enhanced recognition by glycan-dependent HIV-1 broadly neutralizing antibodies.

Authors:  Hui Cai; Jared Orwenyo; Javier Guenaga; John Giddens; Christian Toonstra; Richard T Wyatt; Lai-Xi Wang
Journal:  Chem Commun (Camb)       Date:  2017-05-03       Impact factor: 6.222

9.  Identification of the binding roles of terminal and internal glycan epitopes using enzymatically synthesized N-glycans containing tandem epitopes.

Authors:  Zhigang Wu; Yunpeng Liu; Cheng Ma; Lei Li; Jing Bai; Lauren Byrd-Leotis; Yi Lasanajak; Yuxi Guo; Liuqing Wen; He Zhu; Jing Song; Yanhong Li; David A Steinhauer; David F Smith; Baohua Zhao; Xi Chen; Wanyi Guan; Peng George Wang
Journal:  Org Biomol Chem       Date:  2016-11-29       Impact factor: 3.876

10.  Synthetic HIV V3 Glycopeptide Immunogen Carrying a N334 N-Glycan Induces Glycan-Dependent Antibodies with Promiscuous Site Recognition.

Authors:  Hui Cai; Rou-Shu Zhang; Jared Orwenyo; John Giddens; Qiang Yang; Celia C LaBranche; David C Montefiori; Lai-Xi Wang
Journal:  J Med Chem       Date:  2018-11-08       Impact factor: 7.446

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