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Literature DB >> 26934307

The essential role of acetyllysine binding by the YEATS domain in transcriptional regulation.

Forest H Andrews¹, Erin K Shanle², Brian D Strahl², Tatiana G Kutateladze².

Abstract

The YEATS domains of AF9 and Taf14 have recently been found to recognize the histone H3K9ac modification. In this commentary, we discuss the mechanistic and biological implications of this interaction. We compare structures of the YEATS-H3K9ac complexes the highlighting a novel mechanism for the acetyllysine recognition through the aromatic cage. We also summarize the latest findings underscoring a critical role of the acetyllysine binding function of AF9 and Taf14 in transcriptional regulation and DNA repair.

Entities: Chemical Gene

Keywords: AF9; Taf14; YEATS domain; acetyllysine; transcription

Mesh：

Substances：

Year: 2016 PMID： 26934307 PMCID： PMC4802754 DOI： 10.1080/21541264.2015.1125987

Source DB: PubMed Journal: Transcription ISSN： 2154-1272

36 in total

Review 1. Reading chromatin: insights from yeast into YEATS domain structure and function.

Authors: Julia M Schulze; Alice Y Wang; Michael S Kobor
Journal: Epigenetics Date: 2010-10-01 Impact factor: 4.528

2. Structural basis for recognition of H3K56-acetylated histone H3-H4 by the chaperone Rtt106.

Authors: Dan Su; Qi Hu; Qing Li; James R Thompson; Gaofeng Cui; Ahmed Fazly; Brian A Davies; Maria Victoria Botuyan; Zhiguo Zhang; Georges Mer
Journal: Nature Date: 2012-02-05 Impact factor: 49.962

3. Solution structure of the Taf14 YEATS domain and its roles in cell growth of Saccharomyces cerevisiae.

Authors: Wen Zhang; Jiahai Zhang; Xuecheng Zhang; Chao Xu; Xiaoming Tu
Journal: Biochem J Date: 2011-05-15 Impact factor: 3.857

4. Human Polymerase-Associated Factor complex (PAFc) connects the Super Elongation Complex (SEC) to RNA polymerase II on chromatin.

Authors: Nanhai He; Caleb K Chan; Bijan Sobhian; Seemay Chou; Yuhua Xue; Min Liu; Tom Alber; Monsef Benkirane; Qiang Zhou
Journal: Proc Natl Acad Sci U S A Date: 2011-08-22 Impact factor: 11.205

5. The something about silencing protein, Sas3, is the catalytic subunit of NuA3, a yTAF(II)30-containing HAT complex that interacts with the Spt16 subunit of the yeast CP (Cdc68/Pob3)-FACT complex.

Authors: S John; L Howe; S T Tafrov; P A Grant; R Sternglanz; J L Workman
Journal: Genes Dev Date: 2000-05-15 Impact factor: 11.361

Review 6. Epigenetic virtues of chromodomains.

Authors: Bartlomiej J Blus; Kimberly Wiggins; Sepideh Khorasanizadeh
Journal: Crit Rev Biochem Mol Biol Date: 2011-10-25 Impact factor: 8.250

7. A phospho/methyl switch at histone H3 regulates TFIID association with mitotic chromosomes.

Authors: Radhika A Varier; Nikolay S Outchkourov; Petra de Graaf; Frederik M A van Schaik; Henk Jan L Ensing; Fangwei Wang; Jonathan M G Higgins; Geert J P L Kops; H T Marc Timmers
Journal: EMBO J Date: 2010-10-15 Impact factor: 11.598

8. Mechanism and regulation of acetylated histone binding by the tandem PHD finger of DPF3b.

Authors: Lei Zeng; Qiang Zhang; Side Li; Alexander N Plotnikov; Martin J Walsh; Ming-Ming Zhou
Journal: Nature Date: 2010-07-08 Impact factor: 49.962

9. Gene bookmarking accelerates the kinetics of post-mitotic transcriptional re-activation.

Authors: Rui Zhao; Tetsuya Nakamura; Yu Fu; Zsolt Lazar; David L Spector
Journal: Nat Cell Biol Date: 2011-10-09 Impact factor: 28.824

10. Histone recognition and large-scale structural analysis of the human bromodomain family.

Authors: Panagis Filippakopoulos; Sarah Picaud; Maria Mangos; Tracy Keates; Jean-Philippe Lambert; Dalia Barsyte-Lovejoy; Ildiko Felletar; Rudolf Volkmer; Susanne Müller; Tony Pawson; Anne-Claude Gingras; Cheryl H Arrowsmith; Stefan Knapp
Journal: Cell Date: 2012-03-30 Impact factor: 41.582

13 in total

1. Yaf9 subunit of the NuA4 and SWR1 complexes targets histone H3K27ac through its YEATS domain.

Authors: Brianna J Klein; Salar Ahmad; Kendra R Vann; Forest H Andrews; Zachary A Mayo; Gaelle Bourriquen; Joseph B Bridgers; Jinyong Zhang; Brian D Strahl; Jacques Côté; Tatiana G Kutateladze
Journal: Nucleic Acids Res Date: 2018-01-09 Impact factor: 16.971

Review 2. Insights into newly discovered marks and readers of epigenetic information.

Authors: Forest H Andrews; Brian D Strahl; Tatiana G Kutateladze
Journal: Nat Chem Biol Date: 2016-08-18 Impact factor: 15.040

3. Taf2 mediates DNA binding of Taf14.

Authors: Brianna J Klein; Jordan T Feigerle; Jibo Zhang; Christopher C Ebmeier; Lixin Fan; Rohit K Singh; Wesley W Wang; Lauren R Schmitt; Thomas Lee; Kirk C Hansen; Wenshe R Liu; Yun-Xing Wang; Brian D Strahl; P Anthony Weil; Tatiana G Kutateladze
Journal: Nat Commun Date: 2022-06-08 Impact factor: 17.694

The essential role of acetyllysine binding by the YEATS domain in transcriptional regulation.

Review 1. Reading chromatin: insights from yeast into YEATS domain structure and function.

2. Structural basis for recognition of H3K56-acetylated histone H3-H4 by the chaperone Rtt106.

3. Solution structure of the Taf14 YEATS domain and its roles in cell growth of Saccharomyces cerevisiae.

4. Human Polymerase-Associated Factor complex (PAFc) connects the Super Elongation Complex (SEC) to RNA polymerase II on chromatin.

5. The something about silencing protein, Sas3, is the catalytic subunit of NuA3, a yTAF(II)30-containing HAT complex that interacts with the Spt16 subunit of the yeast CP (Cdc68/Pob3)-FACT complex.

Review 6. Epigenetic virtues of chromodomains.

7. A phospho/methyl switch at histone H3 regulates TFIID association with mitotic chromosomes.

8. Mechanism and regulation of acetylated histone binding by the tandem PHD finger of DPF3b.

9. Gene bookmarking accelerates the kinetics of post-mitotic transcriptional re-activation.

10. Histone recognition and large-scale structural analysis of the human bromodomain family.

1. Yaf9 subunit of the NuA4 and SWR1 complexes targets histone H3K27ac through its YEATS domain.

Review 2. Insights into newly discovered marks and readers of epigenetic information.

3. Taf2 mediates DNA binding of Taf14.

Review 4. Beyond the marks: reader-effectors as drivers of epigenetics and chromatin engineering.

5. Structural Insights into Histone Crotonyl-Lysine Recognition by the AF9 YEATS Domain.

Review 6. Bromodomain biology and drug discovery.

Review 7. Mechanistic similarities in recognition of histone tails and DNA by epigenetic readers.

8. The Taf14 YEATS domain is a reader of histone crotonylation.

Review 9. MLL-Rearranged Leukemias-An Update on Science and Clinical Approaches.

10. Taf14 is required for the stabilization of transcription pre-initiation complex in Saccharomyces cerevisiae.