Literature DB >> 27538025

Insights into newly discovered marks and readers of epigenetic information.

Forest H Andrews1, Brian D Strahl2, Tatiana G Kutateladze1.   

Abstract

The field of chromatin biology has been advancing at an accelerated pace. Recent discoveries of previously uncharacterized sites and types of post-translational modifications (PTMs) and the identification of new sets of proteins responsible for the deposition, removal, and reading of these marks continue raising the complexity of an already exceedingly complicated biological phenomenon. In this Perspective article we examine the biological importance of new types and sites of histone PTMs and summarize the molecular mechanisms of chromatin engagement by newly discovered epigenetic readers. We also highlight the imperative role of structural insights in understanding PTM-reader interactions and discuss future directions to enhance the knowledge of PTM readout.

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Year:  2016        PMID: 27538025      PMCID: PMC5116920          DOI: 10.1038/nchembio.2149

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  55 in total

1.  Molecular mechanism of histone H3K4me3 recognition by plant homeodomain of ING2.

Authors:  Pedro V Peña; Foteini Davrazou; Xiaobing Shi; Kay L Walter; Vladislav V Verkhusha; Or Gozani; Rui Zhao; Tatiana G Kutateladze
Journal:  Nature       Date:  2006-05-21       Impact factor: 49.962

Review 2.  Chromatin proteins and modifications as drug targets.

Authors:  Kristian Helin; Dashyant Dhanak
Journal:  Nature       Date:  2013-10-24       Impact factor: 49.962

3.  Molecular Coupling of Histone Crotonylation and Active Transcription by AF9 YEATS Domain.

Authors:  Yuanyuan Li; Benjamin R Sabari; Tatyana Panchenko; Hong Wen; Dan Zhao; Haipeng Guan; Liling Wan; He Huang; Zhanyun Tang; Yingming Zhao; Robert G Roeder; Xiaobing Shi; C David Allis; Haitao Li
Journal:  Mol Cell       Date:  2016-04-21       Impact factor: 17.970

Review 4.  Covalent histone modifications--miswritten, misinterpreted and mis-erased in human cancers.

Authors:  Ping Chi; C David Allis; Gang Greg Wang
Journal:  Nat Rev Cancer       Date:  2010-07       Impact factor: 60.716

5.  The PZP Domain of AF10 Senses Unmodified H3K27 to Regulate DOT1L-Mediated Methylation of H3K79.

Authors:  Shoudeng Chen; Ze Yang; Alex W Wilkinson; Aniruddha J Deshpande; Simone Sidoli; Krzysztof Krajewski; Brian D Strahl; Benjamin A Garcia; Scott A Armstrong; Dinshaw J Patel; Or Gozani
Journal:  Mol Cell       Date:  2015-10-01       Impact factor: 17.970

6.  Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification.

Authors:  Minjia Tan; Hao Luo; Sangkyu Lee; Fulai Jin; Jeong Soo Yang; Emilie Montellier; Thierry Buchou; Zhongyi Cheng; Sophie Rousseaux; Nisha Rajagopal; Zhike Lu; Zhen Ye; Qin Zhu; Joanna Wysocka; Yang Ye; Saadi Khochbin; Bing Ren; Yingming Zhao
Journal:  Cell       Date:  2011-09-16       Impact factor: 41.582

7.  Regulation of Methyllysine Readers through Phosphorylation.

Authors:  Forest H Andrews; Jovylyn Gatchalian; Krzysztof Krajewski; Brian D Strahl; Tatiana G Kutateladze
Journal:  ACS Chem Biol       Date:  2016-01-06       Impact factor: 5.100

8.  AF9 YEATS domain links histone acetylation to DOT1L-mediated H3K79 methylation.

Authors:  Yuanyuan Li; Hong Wen; Yuanxin Xi; Kaori Tanaka; Haibo Wang; Danni Peng; Yongfeng Ren; Qihuang Jin; Sharon Y R Dent; Wei Li; Haitao Li; Xiaobing Shi
Journal:  Cell       Date:  2014-10-23       Impact factor: 41.582

9.  Distinct mode of methylated lysine-4 of histone H3 recognition by tandem tudor-like domains of Spindlin1.

Authors:  Na Yang; Weixiang Wang; Yan Wang; Mingzhu Wang; Qiang Zhao; Zihe Rao; Bing Zhu; Rui-Ming Xu
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-17       Impact factor: 11.205

10.  Cell-of-origin chromatin organization shapes the mutational landscape of cancer.

Authors:  Paz Polak; Rosa Karlić; Amnon Koren; Robert Thurman; Richard Sandstrom; Michael Lawrence; Alex Reynolds; Eric Rynes; Kristian Vlahoviček; John A Stamatoyannopoulos; Shamil R Sunyaev
Journal:  Nature       Date:  2015-02-19       Impact factor: 49.962

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  53 in total

1.  Kinetic and high-throughput profiling of epigenetic interactions by 3D-carbene chip-based surface plasmon resonance imaging technology.

Authors:  Shuai Zhao; Mo Yang; Wenfei Zhou; Baichao Zhang; Zhiqiang Cheng; Jiaxin Huang; Min Zhang; Zhiyou Wang; Rui Wang; Zhonglei Chen; Jinsong Zhu; Haitao Li
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-14       Impact factor: 11.205

2.  Measuring Histone Deacetylase Inhibition in the Brain.

Authors:  Doodipala Samba Reddy; Xin Wu; Victoria M Golub; W Mohaiza Dashwood; Roderick H Dashwood
Journal:  Curr Protoc Pharmacol       Date:  2018-06-07

3.  A Unique pH-Dependent Recognition of Methylated Histone H3K4 by PPS and DIDO.

Authors:  Adam H Tencer; Jovylyn Gatchalian; Brianna J Klein; Abid Khan; Yi Zhang; Brian D Strahl; Karel H M van Wely; Tatiana G Kutateladze
Journal:  Structure       Date:  2017-09-14       Impact factor: 5.006

Review 4.  Epigenetic drug discovery: a success story for cofactor interference.

Authors:  A Ganesan
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-06-05       Impact factor: 6.237

Review 5.  SET/MLL family proteins in hematopoiesis and leukemia.

Authors:  Weiwei Yang; Patricia Ernst
Journal:  Int J Hematol       Date:  2016-10-31       Impact factor: 2.490

6.  Histone Modifications Form Epigenetic Regulatory Networks to Regulate Abiotic Stress Response.

Authors:  Minoru Ueda; Motoaki Seki
Journal:  Plant Physiol       Date:  2019-11-04       Impact factor: 8.340

7.  Recognition of Histone H3K14 Acylation by MORF.

Authors:  Brianna J Klein; Johayra Simithy; Xiaolu Wang; JaeWoo Ahn; Forest H Andrews; Yi Zhang; Jacques Côté; Xiaobing Shi; Benjamin A Garcia; Tatiana G Kutateladze
Journal:  Structure       Date:  2017-03-09       Impact factor: 5.006

8.  Characteristics of a PHD Finger Subtype.

Authors:  Daniel Boamah; Tao Lin; Franchesca A Poppinga; Shraddha Basu; Shahariar Rahman; Francisca Essel; Suvobrata Chakravarty
Journal:  Biochemistry       Date:  2018-01-05       Impact factor: 3.162

9.  Bridging chromatin structure and function over a range of experimental spatial and temporal scales by molecular modeling.

Authors:  Stephanie Portillo-Ledesma; Tamar Schlick
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2019-08-06

Review 10.  Transcriptional and Epigenetic Regulation by the Mechanistic Target of Rapamycin Complex 1 Pathway.

Authors:  R Nicholas Laribee
Journal:  J Mol Biol       Date:  2018-10-23       Impact factor: 5.469

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