| Literature DB >> 26918044 |
I-Wei Chang1, Yu-Hui Wang2, Wen-Jeng Wu3, Peir-In Liang4, Wei-Ming Li3, Bi-Wen Yeh3, Ting-Feng Wu5, Hong-Lin He6, Steven Kuan-Hua Huang7, Chien-Feng Li8.
Abstract
BACKGROUND AND AIMS: Oncogenesis is a multistep process, resulting from the accumulations of multiple mutations. Of these mutations, self-sufficiency in growth signals, i.e., disruption of cell growth regulation, is the first episode. Nonetheless, the genes associated with cell growth dysregulation have seldom been systematically evaluated in either urothelial carcinomas of upper urinary tract (UTUC) or urothelial carcinomas of urinary baldder (UBUC). By data mining a published transcriptomic dataset of UBUCs (GSE31684), we identified the NDN gene as one of the most significant of those associated with the regulation of cell growth and found this gene is associated with advanced tumor status and metastatic disease (GO:0001558). Accordingly, we analyzed NDN transcript and protein expression with their clinicopathological significance.Entities:
Keywords: NDN gene; Necdin; Prognosis.; Urothelial carcinoma
Year: 2016 PMID: 26918044 PMCID: PMC4747885 DOI: 10.7150/jca.13638
Source DB: PubMed Journal: J Cancer ISSN: 1837-9664 Impact factor: 4.207
Summary of differentially expressed genes associated with regulation of cell growth (GO:0001558) and showed positive associations to cancer invasiveness and metastasis in the transcriptome of urothelial carcinoma of urinary bladder (GSE31684).
| Probe | Comparing T2-4 to Ta-T1 | Comparing Meta. to Non-Meta.# | Gene Symbol | Biological Process | Molecular Function | ||
|---|---|---|---|---|---|---|---|
| log ratio | p-value | log ratio | p-value | ||||
| 1554741_s_at | 0.4313 | <0.0001 | 0.3919 | <0.0001 | regulation of cell growth, signal transduction | growth factor binding, insulin-like growth factor binding | |
| 201666_at | 1.1435 | 0.0001 | 1.0825 | <0.0001 | regulation of cell growth, signal transduction | growth factor binding, insulin-like growth factor binding | |
| 205131_x_at | 0.337 | 0.0008 | 0.2968 | 0.0001 | regulation of cell growth, signal transduction | growth factor binding, insulin-like growth factor binding | |
| 205168_at | 0.7821 | 0.0044 | 1.0228 | <0.0001 | axon extension involved in development, axonal fasciculation, axonogenesis, central nervous system development, glial cell migration, negative regulation of cell proliferation, nerve growth factor receptor signaling pathway, nervous system development, neuron development, neuron migration, regulation of cell growth, regulation of progression through cell cycle, regulation of transcription; DNA-dependent, respiratory gaseous exchange, sensory perception of pain, transcription | DNA binding, gamma-tubulin binding, protein binding | |
| 205782_at | 0.8325 | 0.0003 | 0.8815 | <0.0001 | regulation of cell growth, signal transduction | growth factor binding, insulin-like growth factor binding | |
| 207426_s_at | 2.6399 | <0.0001 | 1.4678 | <0.0001 | regulation of cell growth, signal transduction | growth factor binding, insulin-like growth factor binding | |
#, Meta., distal metastasis developed during follow-up; Non-Meta.: no metastatic event developed.
Correlations between NDN expression and other important clinicopathological parameters in urothelial carcinomas.
| Parameter | Category | Upper Urinary Tract Urothelial Carcinoma | Urinary Bladder Urothelial Carcinoma | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Case No. (%) | NDN Expression | p-value | Case No. (%) | NDN Expression | p-value | ||||
| Low (%) | High (%) | Low (%) | High (%) | ||||||
| Gender | Male | 158 (46.5) | 86 (54.4) | 72 (45.6) | 0.128 | 216 (73.2) | 109 (50.5) | 107 (49.5) | 0.719 |
| Female | 182 (53.5) | 84 (46.2) | 98 (53.8) | 79 (26.8) | 38 (48.1) | 41 (51.9) | |||
| Age (years) | < 65 | 138 (40.6) | 70 (50.7) | 68 (49.3) | 0.825 | 121 (41.0) | 59 (48.8) | 62 (51.2) | 0.759 |
| ≥ 65 | 202 (59.4) | 100 (49.5) | 102 (50.5) | 174 (59.0) | 88 (50.6) | 86 (49.4) | |||
| Tumor location | Renal pelvis | 141 (41.5) | 71 (50.4) | 70 (49.6) | 0.685 | - | - | - | - |
| Ureter | 150 (44.1) | 72 (48.0) | 78 (52.0) | - | - | - | - | ||
| Renal pelvis & ureter | 49 (14.4) | 27 (55.1) | 22 (44.9) | - | - | - | - | ||
| Multifocality | Single | 278 (81.8) | 138 (49.6) | 140 (50.4) | 0.779 | - | - | - | - |
| Multifocal | 62 (18.2) | 32 (51.6) | 30 (48.4) | - | - | - | - | ||
| Primary tumor (pT) | pTa | 89 (26.2) | 56 (62.9) | 33 (37.1) | 0.003* | 84 (28.5) | 62 (73.8) | 22 (26.2) | <0.001* |
| pT1 | 92 (27.0) | 49 (53.3) | 43 (46.7) | 88 (29.8) | 48 (54.5) | 40 (45.5) | |||
| pT2-pT4 | 159 (46.8) | 65 (40.9) | 94 (59.1) | 123 (41.7) | 37 (30.0) | 86 (70.0) | |||
| Nodal metastasis | Negative (pN0) | 312 (91.8) | 164 (52.6) | 148 (47.4) | 0.002* | 266 (90.2) | 139 (52.3) | 127 (47.7) | 0.012* |
| Positive (pN1-pN3) | 28 (8.2) | 6 (21.4) | 22 (78.6) | 29 (9.8) | 8 (27.6) | 21 (72.4) | |||
| Histological grade | Low grade | 56 (16.5) | 36 (64.3) | 20 (35.7) | 0.019* | 56 (19.0) | 38 (67.9) | 18 (32.1) | 0.003* |
| High grade | 284 (83.5) | 134 (47.2) | 150 (52.8) | 239 (81.0) | 109 (45.6) | 130 (54.4) | |||
| Vascular invasion | Absent | 234 (68.9) | 122 (52.1) | 112 (47.9) | 0.242 | 246 (83.4) | 131 (53.3) | 115 (46.7) | 0.008* |
| Present | 106 (31.1) | 48 (45.3) | 58 (54.7) | 49 (16.6) | 16 (32.7) | 33 (67.3) | |||
| Perineural invasion | Absent | 321 (94.4) | 164 (51.1) | 157 (48.9) | 0.098 | 275 (93.2) | 144 (52.4) | 131 (47.6) | 0.001* |
| Present | 19 (5.6) | 6 (31.6) | 13 (68.4) | 20 (6.8) | 3 (15.0) | 17 (85.0) | |||
| Mitotic rate (per 10 high power fields)# | 340 | 9.66+/-7.315 | 14.96+/-15.324 | 0.004* | 295 | 11.41+/-10.286 | 17.38+/-16.469 | 0.005* | |
#, Mann-Whitney U test; *, Statistically significant.
Univariate log-rank and multivariate analyses for Disease-specific and Metastasis-free Survivals in upper urinary tract urothelial carcinoma.
| Parameter | Category | Case No. (%) | Disease-specific Survival | Metastasis-free Survival | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Univariate analysis | Multivariate analysis | Univariate analysis | Multivariate analysis | |||||||||
| No. of event (%) | p-value | R.R. | 95% C.I. | p-value | No. of event (%) | p-value | R.R. | 95% C.I. | p-value | |||
| Gender | Male | 158 (46.5) | 28 (17.7) | 0.8286 | - | - | - | 32 (20.3) | 0.7904 | - | - | - |
| Female | 182 (53.5) | 33 (18.1) | - | - | - | 38 (20.9) | - | - | - | |||
| Age (years) | < 65 | 138 (40.6) | 26 (18.8) | 0.9943 | - | - | - | 30 (21.7) | 0.8470 | - | - | - |
| ≥ 65 | 202 (59.4) | 35 (17.3) | - | - | - | 40 (19.8) | - | - | - | |||
| Tumor side | Right | 177 (52.1) | 34 (19.2) | 0.7366 | - | - | - | 38 (21.5) | 0.3074 | - | - | - |
| Left | 154 (45.3) | 26 (16.9) | - | - | - | 32 (20.8) | - | - | - | |||
| Bilateral | 9 (2.6) | 1 (11.1) | - | - | - | 0 (0) | - | - | - | |||
| Tumor location | Renal pelvis | 141 (41.5) | 24 (17.0) | 0.0079* | 1 | - | 0.840 | 31 (22.0) | 0.0659 | - | - | - |
| Ureter | 150 (44.1) | 22 (14.7) | 0.876 | 0.472-1.625 | 25 (16.7) | - | - | - | ||||
| Renal pelvis & ureter | 49 (14.4) | 15 (30.6) | 1.286 | 0.607-7.438 | 14 (28.6) | - | - | - | ||||
| Multifocality | Single | 278 (81.8) | 48 (17.3) | 0.0026* | 1 | - | 0.007* | 52 (18.7) | 0.0127* | 1 | - | 0.002* |
| Multifocal | 62 (18.2) | 18 (29.0) | 2.821 | 1.321-6.024 | 18 (29.0) | 2.402 | 1.381-4.4178 | |||||
| Primary tumor (pT) | pTa | 89 (26.2) | 2 (2.2) | <0.0001* | 1 | - | 0.071 | 4 (4.5) | <0.0001* | 1 | - | 0.227 |
| pT1 | 92 (27.0) | 9 (9.8) | 3.042 | 0.646-14.324 | 15 (16.3) | 2.344 | 0.756-7.267 | |||||
| pT2-pT4 | 159 (46.8) | 50 (31.4) | 5.159 | 1.150-23.153 | 51 (32.1) | 2.497 | 0.795-7.846 | |||||
| Nodal metastasis | Negative (pN0) | 312 (91.8) | 42 (13.5) | <0.0001* | 1 | - | <0.001* | 55 (17.6) | <0.0001* | 1 | - | 0.001* |
| Positive (pN1-pN3) | 28 (8.2) | 19 (67.9) | 5.071 | 2.753-9.340 | 15 (53.6) | 2.888 | 1.552-5.372 | |||||
| Histological grade | Low grade | 56 (16.5) | 4 (7.1) | 0.0215* | 1 | - | 0.007* | 3 (5.4) | 0.0027* | 1 | - | 0.030* |
| High grade | 284 (83.5) | 57 (20.0) | 3.853 | 1.441-10.298 | 67 (23.6) | 3.818 | 1.139-12.792 | |||||
| Vascular invasion | Absent | 234 (68.9) | 24 (10.3) | <0.0001* | 1 | - | 0.059 | 26 (11.1) | <0.0001* | 1 | - | <0.001* |
| Present | 106 (31.1) | 37 (34.9) | 1.774 | 0.978-3.218 | 44 (41.5) | 2.960 | 1.625-5.392 | |||||
| Perineural invasion | Absent | 321 (94.4) | 50 (15.6) | <0.0001* | 1 | - | 0.001* | 61 (19.0) | <0.0001* | 1 | - | 0.014* |
| Present | 19 (5.6) | 11 (57.9) | 3.463 | 1.661-7.222 | 9 (47.4) | 2.562 | 1.208-5.434 | |||||
| Mitotic rate (per 10 high power fields) | < 10 | 173 (50.9) | 27 (15.6) | 0.167 | - | - | 30 (17.3) | 0.0823 | - | - | ||
| >= 10 | 167 (49.1) | 34 (20.4) | - | - | 40 (24.0) | - | - | |||||
| NDN expression | Low | 170 (50.0) | 17 (10.0) | 0.0002* | 1 | - | 0.032* | 24 (14.1) | 0.0027* | 1 | - | 0.033* |
| High | 170 (50.0) | 44 (25.9) | 1.893 | 1.058-3.385 | 46 (27.1) | 1.731 | 1.044-2.869 | |||||
* Statistically significant.
Univariate log-rank and multivariate analyses for Disease-specific and Metastasis-free Survivals in urinary bladder urothelial carcinoma.
| Parameter | Category | Case No. (%) | Disease-specific Survival | Metastasis-free Survival | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Univariate analysis | Multivariate analysis | Univariate analysis | Multivariate analysis | |||||||||
| No. of event (%) | p-value | R.R. | 95% C.I. | p-value | No. of event (%) | p-value | R.R. | 95% C.I. | p-value | |||
| Gender | Male | 216 (73.2) | 41 (19.0) | 0.4446 | - | - | - | 60 (27.8) | 0.2720 | - | - | - |
| Female | 79 (26.8) | 11 (13.9) | - | - | - | 16 (20.3) | - | - | - | |||
| Age (years) | < 65 | 121 (41.0) | 17 (14.0) | 0.1136 | - | - | - | 31 (25.6) | 0.6875 | - | - | - |
| ≥ 65 | 174 (59.0) | 35 (20.1) | - | - | - | 45 (25.9) | - | - | - | |||
| Primary tumor (pT) | pTa | 84 (28.5) | 1 (1.4) | <0.0001* | 1 | - | <0.0001* | 4 (4.8) | <0.0001* | 1 | - | 0.011* |
| pT1 | 88 (29.8) | 9 (10.2) | 3.817 | 1.748-8.333 | 23 (26.1) | 4.631 | 1.311-16.364 | |||||
| pT2-pT4 | 123 (41.7) | 42 (34.1) | 21.277 | 2.823-200.00 | 49 (39.8) | 6.688 | 1.889-23.677 | |||||
| Nodal metastasis | Negative (pN0) | 266 (90.2) | 41 (15.4) | 0.0002* | 1 | - | 0.387 | 61 (22.9) | <0.0001* | 1 | - | 0.037* |
| Positive (pN1-pN3) | 29 (9.8) | 11 (37.9) | 1.364 | 0.675-2.758 | 15 (51.7) | 1.939 | 1.042-3.607 | |||||
| Histological grade | Low grade | 56 (19.0) | 2 (3.6) | 0.0013* | 1 | - | 0.889 | 5 (8.9) | 0.0007* | 1 | - | 0.711 |
| High grade | 239 (81.0) | 50 (20.9) | 0.895 | 0.188-4.266 | 71 (29.7) | 0.809 | 0.264-2.481 | |||||
| Vascular invasion | Absent | 246 (83.4) | 37 (15.0) | 0.0024* | 1 | - | 0.185 | 54 (22.0) | 0.0001* | 1 | - | 0.835 |
| Present | 49 (16.6) | 15 (30.6) | 0.629 | 0.317-1.249 | 22 (44.9) | 1.067 | 0.580-1.964 | |||||
| Perineural invasion | Absent | 275 (93.2) | 44 (16.0) | 0.0001* | 1 | - | 0.131 | 66 (24.0) | 0.0007* | 1 | - | 0.347 |
| Present | 20 (6.8) | 8 (40.0) | 1.908 | 0.824-4.420 | 10 (50.0) | 1.429 | 0.679-3.009 | |||||
| Mitotic rate (per 10 high power fields) | < 10 | 139 (47.1) | 12 (8.6) | <0.0001* | 1 | - | 0.011* | 23 (16.5) | <0.0001* | 1 | - | 0.019* |
| >= 10 | 156 (52.9) | 40 (25.6) | 2.409 | 1.219-4.761 | 53 (34.0) | 1.871 | 1.109-3.156 | |||||
| NDN expression | Low | 147 (49.8) | 10 (6.8) | <0.0001* | 1 | - | 0.012* | 21 (14.3) | <0.0001* | 1 | - | 0.021* |
| High | 148 (50.2) | 42 (28.4) | 2.477 | 1.220-5.028 | 55 (37.2) | 1.852 | 1.098-3.123 | |||||
* Statistically significant.