| Literature DB >> 27471555 |
I-Wei Chang1, Victor Chia-Hsiang Lin2, Wen-Jen Wu3, Peir-In Liang4, Wei-Ming Li5, Bi-Wen Yeh5, Hong-Lin He6, Alex Chien-Hwa Liao7, Ti-Chun Chan8, Chien-Feng Li9.
Abstract
PURPOSE: Urothelial carcinoma of the urinary bladder and upper tract is prevalent. By subjecting a documented transcriptome data set of urothelial carcinoma of bladder (GSE31684) to data mining and focusing on genes linked to peptidase activity (GO:0008233), we recognized C1S as the most significantly upregulated gene related to an advanced tumor status and metastasis. We subsequently analyzed the association of both C1S mRNA and its encoded protein expression with the clinical and pathological significance.Entities:
Keywords: C1S gene; Complement component 1s; Prognosis.; Urothelial carcinoma
Year: 2016 PMID: 27471555 PMCID: PMC4964123 DOI: 10.7150/jca.15339
Source DB: PubMed Journal: J Cancer ISSN: 1837-9664 Impact factor: 4.207
Summary of differentially expressed genes associated with peptidase activity (GO:0008233) and showed positive associations to cancer invasiveness and metastasis in the transcriptome of urothelial carcinoma of urinary bladder (GSE31684).
| 6.5 | Comparing T2-4 to Ta-T1 | Comparing Meta. to Non-Meta.# | Gene Symbol | Gene Title | Molecular Function | ||
|---|---|---|---|---|---|---|---|
| log ratio | p-value | log ratio | p-value | ||||
| 1555229_a_at | 1.4602 | 0.0001 | 0.9181 | 0.0013 | complement component 1; s subcomponent | calcium ion binding, complement component C1s activity, hydrolase activity, metal ion binding, peptidase activity, rhodopsin-like receptor activity, serine-type endopeptidase activity, serine-type endopeptidase inhibitor activity, serine-type peptidase activity | |
| 201117_s_at | 1.081 | 0.0048 | 0.8652 | 0.0037 | carboxypeptidase E | carboxypeptidase A activity, carboxypeptidase E activity, carboxypeptidase activity, hydrolase activity, metal ion binding, metallopeptidase activity, peptidase activity, zinc ion binding | |
| 205825_at | 0.3938 | 0.0087 | 0.3003 | 0.0088 | proprotein convertase subtilisin/kexin type 1 | calcium ion binding, hydrolase activity, peptidase activity, proprotein convertase 1 activity, serine-type endopeptidase activity, subtilase activity | |
| 209955_s_at | 1.5836 | <0.0001 | 0.5783 | 0.0051 | fibroblast activation protein; alpha | dipeptidyl-peptidase IV activity, hydrolase activity, metalloendopeptidase activity, peptidase activity, prolyl oligopeptidase activity, protein dimerization activity, protein homodimerization activity, serine-type endopeptidase activity, serine-type peptidase activity | |
| 213652_at | 0.5635 | <0.0001 | 0.3841 | 0.0002 | proprotein convertase subtilisin/kexin type 5 | hydrolase activity, peptidase activity, serine-type endopeptidase activity, subtilase activity | |
| 214913_at | 0.2909 | 0.0009 | 0.2036 | 0.0025 | ADAM metallopeptidase with thrombospondin type 1 motif; 3 | heparin binding, hydrolase activity, metal ion binding, metalloendopeptidase activity, metallopeptidase activity, peptidase activity, zinc ion binding | |
| 227860_at | 0.6945 | <0.0001 | 0.4549 | 0.0001 | carboxypeptidase X (M14 family); member 1 | carboxypeptidase A activity, carboxypeptidase E activity, carboxypeptidase activity, hydrolase activity, metal ion binding, metallopeptidase activity, peptidase activity, zinc ion binding | |
| 235874_at | 0.3376 | 0.0001 | 0.2276 | 0.0007 | protease; serine; 35 | peptidase activity, serine-type endopeptidase activity | |
| 1558117_s_at | -0.5337 | 0.0039 | -0.4279 | 0.0026 | ubiquitin specific peptidase 31 | cysteine-type peptidase activity, hydrolase activity, peptidase activity, ubiquitin thiolesterase activity | |
| 210693_at | -0.376 | <0.0001 | -0.1507 | 0.001 | signal peptide peptidase-like 2B | aspartic-type endopeptidase activity, hydrolase activity, peptidase activity | |
| 220390_at | -0.1759 | 0.0032 | -0.1536 | 0.0007 | ATP/GTP binding protein-like 2 | carboxypeptidase A activity, carboxypeptidase activity, hydrolase activity, metal ion binding, metallopeptidase activity, peptidase activity, zinc ion binding | |
| 239272_at | -1.4769 | <0.0001 | -0.7875 | 0.0022 | matrix metallopeptidase 28 | calcium ion binding, hydrolase activity, metal ion binding, metalloendopeptidase activity, metallopeptidase activity, peptidase activity, zinc ion binding | |
#, Meta., distal metastasis developed during follow-up; Non-Meta.: no metastatic event developed.
Correlations between C1s expression and other important clinicopathological parameters in urothelial carcinomas.
| Parameter | Category | Upper Urinary Tract Urothelial Carcinoma | Urinary Bladder Urothelial Carcinoma | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Case No. | C1s Expression | p-value | Case No. | C1s Expression | p-value | ||||
| Low | High | Low | High | ||||||
| Gender | Male | 158 | 74 | 84 | 0.277 | 216 | 112 | 104 | 0.251 |
| Female | 182 | 96 | 86 | 79 | 35 | 44 | |||
| Age (years) | < 65 | 138 | 67 | 71 | 0.659 | 121 | 58 | 63 | 0.587 |
| ≥ 65 | 202 | 103 | 99 | 174 | 89 | 85 | |||
| Tumor location | Renal pelvis | 141 | 64 | 77 | 0.228 | - | - | - | - |
| Ureter | 150 | 77 | 73 | - | - | - | - | ||
| Renal pelvis & ureter | 49 | 29 | 20 | - | - | - | - | ||
| Multifocality | Single | 278 | 135 | 143 | 0.261 | - | - | - | - |
| Multifocal | 62 | 35 | 27 | - | - | - | - | ||
| Primary tumor (T) | Ta | 89 | 64 | 25 | <0.001* | 84 | 70 | 14 | <0.001* |
| T1 | 92 | 67 | 25 | 88 | 50 | 38 | |||
| T2-T4 | 159 | 39 | 120 | 123 | 27 | 96 | |||
| Nodal metastasis | Negative (N0) | 312 | 163 | 149 | 0.006* | 266 | 142 | 124 | <0.001* |
| Positive (N1-N3) | 28 | 7 | 21 | 29 | 5 | 24 | |||
| Histological grade | Low grade | 56 | 40 | 16 | <0.001* | 56 | 45 | 11 | <0.001* |
| High grade | 284 | 130 | 154 | 239 | 102 | 137 | |||
| Vascular invasion | Absent | 234 | 147 | 87 | <0.001* | 246 | 136 | 110 | <0.001* |
| Present | 106 | 23 | 83 | 49 | 11 | 38 | |||
| Perineural invasion | Absent | 321 | 165 | 156 | 0.034* | 275 | 142 | 133 | 0.021* |
| Present | 19 | 5 | 14 | 20 | 5 | 15 | |||
| Mitotic rate (per 10 high power fields) | < 10 | 173 | 96 | 77 | 0.039* | 139 | 82 | 57 | 0.003* |
| >= 10 | 167 | 74 | 93 | 156 | 65 | 91 | |||
* Statistically significant.
Univariate log-rank and multivariate analyses for Disease-specific and Metastasis-free Survivals in upper urinary tract urothelial carcinoma.
| Parameter | Category | Case No. | Disease-specific Survival | Metastasis-free Survival | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Univariate analysis | Multivariate analysis | Univariate analysis | Multivariate analysis | |||||||||
| No. of event | p-value | R.R. | 95% C.I. | p-value | No. of event | p-value | R.R. | 95% C.I. | p-value | |||
| Gender | Male | 158 | 28 | 0.8286 | - | - | - | 32 | 0.7904 | - | - | - |
| Female | 182 | 33 | - | - | - | 38 | - | - | - | |||
| Age (years) | < 65 | 138 | 26 | 0.9943 | - | - | - | 30 | 0.8470 | - | - | - |
| ≥ 65 | 202 | 35 | - | - | - | 40 | - | - | - | |||
| Tumor side | Right | 177 | 34 | 0.7366 | - | - | - | 38 | 0.3074 | - | - | - |
| Left | 154 | 26 | - | - | - | 32 | - | - | - | |||
| Bilateral | 9 | 1 | - | - | - | 0 | - | - | - | |||
| Tumor location | Renal pelvis | 141 | 24 | 0.0079* | 1 | - | 0.997 | 31 | 0.0659 | - | - | - |
| Ureter | 150 | 22 | 0.859 | 0.462-1.598 | 25 | - | - | - | ||||
| Renal pelvis & ureter | 49 | 15 | 1.334 | 0.370-4.805 | 14 | - | - | - | ||||
| Multifocality | Single | 273 | 48 | 0.0026* | 1 | - | 0.005* | 52 | 0.0127* | 1 | - | <0.001* |
| Multifocal | 62 | 18 | 3.026 | 1.400-6.540 | 18 | 2.517 | 1.453-4.360 | |||||
| Primary tumor (T) | Ta | 89 | 2 | <0.0001* | 1 | - | 0.015* | 4 | <0.0001* | 1 | - | 0.180 |
| T1 | 92 | 9 | 5.281 | 0.834-33.444 | 15 | 2.807 | 0.865-9.110 | |||||
| T2-T4 | 159 | 50 | 7.405 | 1.286-42.636 | 51 | 2.657 | 0.823-8.582 | |||||
| Nodal metastasis | Negative (N0) | 312 | 42 | <0.0001* | 1 | - | <0.001* | 55 | <0.0001* | 1 | - | <0.001* |
| Positive (N1-N3) | 28 | 19 | 5.707 | 3.085-10.558 | 15 | 3.135 | 1.698-5.788 | |||||
| Histological grade | Low grade | 56 | 4 | 0.0215* | 1 | - | 0.029* | 3 | 0.0027* | 1 | - | 0.020* |
| High grade | 284 | 57 | 3.507 | 1.137-10.814 | 67 | 4.259 | 1.251-14.496 | |||||
| Vascular invasion | Absent | 234 | 24 | <0.0001* | 1 | - | 0.160 | 26 | <0.0001* | 1 | - | 0.003* |
| Present | 106 | 37 | 1.531 | 0.845-2.774 | 44 | 2.459 | 1.347-4.487 | |||||
| Perineural invasion | Absent | 321 | 50 | <0.0001* | 1 | - | <0.001* | 61 | <0.0001* | 1 | - | 0.009* |
| Present | 19 | 11 | 4.045 | 1.931-8.476 | 9 | 2.712 | 1.289-5.708 | |||||
| Mitotic rate (per 10 high power fields) | < 10 | 173 | 27 | 0.167 | - | - | 30 | 0.0823 | - | - | ||
| >= 10 | 167 | 34 | - | - | 40 | - | - | |||||
| C1s expression | Low | 170 | 8 | <0.0001* | 1 | - | <0.001* | 18 | <0.0001* | 1 | - | 0.006* |
| High | 170 | 53 | 1.755 | 1.385-2.225 | 52 | 1.482 | 1.117-1.967 | |||||
* Statistically significant
Univariate log-rank and multivariate analyses for Disease-specific and Metastasis-free Survivals in urinary bladder urothelial carcinoma.
| Parameter | Category | Case No. | Disease-specific Survival | Metastasis-free Survival | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Univariate analysis | Multivariate analysis | Univariate analysis | Multivariate analysis | |||||||||
| No. of event | p-value | R.R. | 95% C.I. | p-value | No. of event | p-value | R.R. | 95% C.I. | p-value | |||
| Gender | Male | 216 | 41 | 0.4446 | - | - | - | 60 | 0.2720 | - | - | - |
| Female | 79 | 11 | - | - | - | 16 | - | - | - | |||
| Age (years) | < 65 | 121 | 17 | 0.1136 | - | - | - | 31 | 0.6875 | - | - | - |
| ≥ 65 | 174 | 35 | - | - | - | 45 | - | - | - | |||
| Primary tumor (T) | Ta | 84 | 1 | <0.0001* | 1 | - | 0.006* | 4 | <0.0001* | 1 | - | 0.019* |
| T1 | 88 | 9 | 2.865 | 1.299-6.329 | 23 | 4.177 | 1.216-14.343 | |||||
| T2-T4 | 123 | 42 | 11.764 | 1.344-100 | 49 | 5.208 | 1.487-18.234 | |||||
| Nodal metastasis | Negative (N0) | 266 | 41 | 0.0002* | 1 | - | 0.859 | 61 | <0.0001* | 1 | - | 0.099 |
| Positive (N1-N3) | 29 | 11 | 1.066 | 0.524-2.169 | 15 | 1.689 | 0.906-3.149 | |||||
| Histological grade | Low grade | 56 | 2 | 0.0013* | 1 | - | 0.886 | 5 | 0.0007* | 1 | - | 0.685 |
| High grade | 239 | 50 | 0.892 | 0.187-4.264 | 71 | 0.799 | 0.269-2.368 | |||||
| Vascular invasion | Absent | 246 | 37 | 0.0024* | 1 | - | 0.119 | 54 | 0.0001* | 1 | - | 0.977 |
| Present | 49 | 15 | 0.574 | 0.286-1.154 | 22 | 0.991 | 0.534-1.838 | |||||
| Perineural invasion | Absent | 275 | 44 | 0.0001* | 1 | - | 0.018* | 66 | 0.0007* | 1 | - | 0.112 |
| Present | 20 | 8 | 2.805 | 1.197-6.574 | 10 | 1.834 | 0.868-3.878 | |||||
| Mitotic rate (per 10 high power fields) | < 10 | 139 | 12 | <0.0001* | 1 | - | 0.011* | 23 | <0.0001* | 1 | - | 0.022* |
| >= 10 | 156 | 40 | 2.379 | 1.220-4.640 | 53 | 1.828 | 1.092-3.059 | |||||
| C1s expression | Low | 147 | 3 | <0.0001* | 1 | - | <0.001* | 16 | <0.0001* | 1 | - | <0.001* |
| High | 148 | 49 | 11.441 | 3.478-37.628 | 60 | 2.984 | 1.661-5.361 | |||||
* Statistically significant