| Literature DB >> 27471570 |
I-Wei Chang1, Chien-Feng Li2, Victor Chia-Hsiang Lin3, Hong-Lin He4, Per-In Liang5, Wen-Jeng Wu6, Ching-Chia Li6, Chun-Nung Huang7.
Abstract
PURPOSE: Urothelial carcinoma (UC) is a type of tumor, especially of the urinary bladder, that affects people worldwide. Clarification of its detailed tumor biology and discovery of potential targets for developing treatment strategies are imperative because of frequent recurrences and poor prognosis of advanced UCs. By data mining a published dataset of UC of bladder (UCB) transcriptome (GSE31684) from Gene Expression Omnibus, National Center of Biotechnology Information (GEO, NCBI), we identified that THBS2 was the most significantly upregulated gene among those related to structural molecule activity (GO:0005198). Therefore, we evaluated the clinical significance and prognostic impact of thrombospondin-2 (THBS2) protein, A.K.A. TSP2, which encoded by THBS2 gene.Entities:
Keywords: THBS2; TSP2; prognosis; thrombospondin-2; urothelial carcinoma.
Year: 2016 PMID: 27471570 PMCID: PMC4964138 DOI: 10.7150/jca.15696
Source DB: PubMed Journal: J Cancer ISSN: 1837-9664 Impact factor: 4.207
Summary of differentially expressed genes associated with structural molecule activity (GO:0005198) and showed positive associations to cancer invasiveness and metastasis in the transcriptome of urothelial carcinoma of urinary bladder (GSE31684).
| Probe | Comparing T2-4 to Ta-T1 | Comparing Meta. to Non-Meta.# | Gene Symbol | Biological Process | Molecular Function | ||
|---|---|---|---|---|---|---|---|
| log ratio | p-value | log ratio | p-value | ||||
| 203083_at | 2.2182 | <0.0001 | 0.9344 | 0.003 | cell adhesion | calcium ion binding, heparin binding, protein binding, structural molecule activity | |
| 209156_s_at | 2.1304 | <0.0001 | 0.9732 | 0.0021 | cell adhesion, cell-cell adhesion, extracellular matrix organization and biogenesis, phosphate transport | extracellular matrix structural constituent, protein binding, protein binding; bridging, structural molecule activity | |
| 215076_s_at | 1.4494 | <0.0001 | 0.5177 | 0.0031 | circulation, organ morphogenesis, phosphate transport | extracellular matrix structural constituent, structural molecule activity | |
| 226084_at | 1.2832 | <0.0001 | 0.9436 | <0.0001 | dendrite development, microtubule bundle formation | protein binding, structural molecule activity | |
| 204345_at | 1.274 | <0.0001 | 0.5661 | 0.001 | cell adhesion, female pregnancy, integrin-mediated signaling pathway, phosphate transport | integrin binding, protein binding, structural molecule activity | |
| 200974_at | 1.2155 | 0.0002 | 0.6759 | 0.0087 | ATP binding, nucleotide binding, protein binding, structural molecule activity | ||
| 212681_at | 1.0972 | 0.0001 | 1.2658 | <0.0001 | cortical actin cytoskeleton organization and biogenesis | actin binding, binding, cytoskeletal protein binding, protein binding, structural molecule activity | |
| 214023_x_at | 0.9093 | 0.0018 | 0.9548 | <0.0001 | microtubule-based movement, microtubule-based process, protein polymerization | GTP binding, GTPase activity, nucleotide binding, protein binding, structural constituent of cytoskeleton, structural molecule activity | |
| 221900_at | 0.8558 | <0.0001 | 0.3936 | 0.0014 | cell adhesion, cell-cell adhesion, extracellular matrix organization and biogenesis, phosphate transport | extracellular matrix structural constituent, protein binding, protein binding; bridging, structural molecule activity | |
| 213290_at | 0.832 | 0.0002 | 0.5142 | 0.004 | cell adhesion, cell-cell adhesion, extracellular matrix organization and biogenesis, phosphate transport | extracellular matrix structural constituent, protein binding, protein binding; bridging, structural molecule activity | |
| 209082_s_at | 0.6536 | 0.0015 | 0.4516 | 0.0042 | angiogenesis, cell adhesion, endothelial cell morphogenesis, extracellular matrix organization and biogenesis, negative regulation of cell proliferation, organ morphogenesis, phosphate transport, positive regulation of apoptosis, positive regulation of cell migration, positive regulation of cell proliferation, visual perception | extracellular matrix structural constituent, metal ion binding, protein binding, structural molecule activity, zinc ion binding | |
| 209493_at | 0.4147 | 0.0095 | 0.436 | 0.0003 | cell adhesion | protein binding, structural molecule activity | |
| 214577_at | 0.3773 | 0.0029 | 0.3943 | <0.0001 | dendrite development, microtubule bundle formation | protein binding, structural molecule activity | |
#, Meta., distal metastasis developed during follow-up; Non-Meta.: no metastatic event developed.
Correlations between THBS2 Expression and other important clinicopathological parameters in urothelial carcinomas.
| Parameter | Category | Upper Urinary Tract Urothelial Carcinoma | Urinary Bladder Urothelial Carcinoma | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Case No. | THBS2 Expression | p-value | Case No. | THBS2 Expression | p-value | ||||
| Low | High | Low | High | ||||||
| Gender& | Male | 158 | 75 | 83 | 0.384 | 216 | 110 | 106 | 0.534 |
| Female | 182 | 95 | 87 | 79 | 37 | 42 | |||
| Age (years)# | 340 | 65.94+/-10.01 | 65.22+/-9.69 | 0.214 | 295 | 66.04+/-12.67 | 66.05+/-11.78 | 0.704 | |
| Tumor location& | Renal pelvis | 141 | 70 | 71 | 0.685 | - | - | - | - |
| Ureter | 150 | 78 | 72 | - | - | - | - | ||
| Renal pelvis & ureter | 49 | 22 | 27 | - | - | - | - | ||
| Multifocality& | Single | 278 | 142 | 136 | 0.339 | - | - | - | - |
| Multifocal | 62 | 28 | 34 | - | - | - | - | ||
| Primary tumor (pT) & | pTa | 89 | 63 | 26 | <0.001* | 84 | 68 | 16 | <0.001* |
| pT1 | 92 | 50 | 42 | 88 | 46 | 42 | |||
| pT2-pT4 | 159 | 57 | 102 | 123 | 33 | 90 | |||
| Nodal metastasis& | Negative (pN0) | 312 | 163 | 149 | <0.001* | 266 | 141 | 125 | 0.001* |
| Positive (pN1-pN3) | 28 | 7 | 21 | 29 | 6 | 23 | |||
| Histological grade & | Low grade | 56 | 34 | 22 | 0.079 | 56 | 44 | 12 | 0.001* |
| High grade | 284 | 136 | 148 | 239 | 103 | 136 | |||
| Vascular invasion& | Absent | 234 | 132 | 102 | <0.001* | 246 | 134 | 112 | <0.001* |
| Present | 106 | 38 | 68 | 49 | 13 | 36 | |||
| Perineural invasion& | Absent | 321 | 166 | 155 | 0.009* | 275 | 141 | 134 | 0.066 |
| Present | 19 | 4 | 15 | 20 | 6 | 14 | |||
| Mitotic rate (per 10 high power fields)# | 340 | 11.59+/-12.31 | 13.02+/-12.24 | 0.072 | 295 | 12.10+/-14.67 | 16.70+/-13.03 | <0.001* | |
&, Chi-Square test; #, Mann-Whitney U test; * Statistically significant.
Univariate log-rank and multivariate analyses for Disease-specific and Metastasis-free Survivals in upper urinary tract urothelial carcinoma.
| Parameter | Category | Case No. | Disease-specific Survival | Metastasis-free Survival | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Univariate analysis | Multivariate analysis | Univariate analysis | Multivariate analysis | |||||||||
| No. of event | p-value | R.R. | 95% C.I. | p-value | No. of event | p-value | R.R. | 95% C.I. | p-value | |||
| Gender | Male | 158 | 28 | 0.9301 | - | - | - | 32 | 0.7904 | - | - | - |
| Female | 182 | 33 | - | - | - | 38 | - | - | - | |||
| Age (years) | < 65 | 138 | 26 | 0.8660 | - | - | - | 30 | 0.8470 | - | - | - |
| ≥ 65 | 202 | 35 | - | - | - | 40 | - | - | - | |||
| Tumor side | Right | 177 | 34 | 0.7188 | - | - | - | 38 | 0.3074 | - | - | - |
| Left | 154 | 26 | - | - | - | 32 | - | - | - | |||
| Bilateral | 9 | 1 | - | - | - | 0 | - | - | - | |||
| Tumor location | Renal pelvis | 141 | 24 | 0.0120* | 1 | - | 0.976 | 31 | 0.0659 | - | - | - |
| Ureter | 150 | 22 | 0.940 | 0.500-1.767 | 25 | - | - | - | ||||
| Renal pelvis & ureter | 49 | 15 | 1.140 | 0.319-4.074 | 14 | - | - | |||||
| Multifocality | Single | 273 | 48 | 0.0042* | 1 | 0.012* | 52 | 0.0196* | 1 | - | 0.006* | |
| Multifocal | 62 | 18 | 2.729 | 1.247-5.973 | 18 | 2.175 | 1.254-3.773 | |||||
| Primary tumor (pT) | pTa | 89 | 2 | <0.0001* | 1 | - | 0.040* | 4 | <0.0001* | 1 | - | 0.228 |
| pT1 | 92 | 9 | 3.086 | 0.656-14.514 | 15 | 2.712 | 0.877-8.383 | |||||
| pT2-pT4 | 159 | 50 | 4.580 | 1.003-20.919 | 51 | 2.479 | 0.770-7.976 | |||||
| Nodal metastasis | Negative (pN0) | 312 | 42 | <0.0001* | 1 | - | <0.001* | 55 | <0.0001* | 1 | - | 0.002* |
| Positive (pN1-pN3) | 28 | 19 | 4.935 | 2.681-9.085 | 15 | 2.623 | 1.578-4.847 | |||||
| Histological grade | Low grade | 56 | 4 | 0.0171* | 1 | - | 0.026* | 3 | 0.0019* | 1 | - | 0.126* |
| High grade | 284 | 57 | 3.099 | 1.144-8.395 | 67 | 2.862 | 1.420-11.425 | |||||
| Vascular invasion | Absent | 234 | 24 | <0.0001* | 1 | - | 0.084 | 26 | <0.0001* | 1 | - | 0.001* |
| Present | 106 | 37 | 1.691 | 0.932-3.068 | 44 | 2.643 | 1.456-4.130 | |||||
| Perineural invasion | Absent | 321 | 50 | <0.0001* | 1 | - | 0.001* | 61 | <0.0001* | 1 | - | 0.029* |
| Present | 19 | 11 | 3.375 | 1.608-7.084 | -- | 9 | 2.282 | 1.089-4.784 | ||||
| Mitotic rate (per 10 high power fields) | < 10 | 173 | 27 | 0.1268 | - | - | - | 30 | 0.0581 | - | - | - |
| >= 10 | 167 | 34 | - | - | - | 40 | - | - | - | |||
| THBS2 expression | Low | 170 | 14 | <0.0001* | 1 | - | 0.017* | 17 | <0.0001* | 1 | - | 0.002* |
| High | 170 | 47 | 2.133 | 1.146-3.969 | 53 | 2.471 | 1.401-4.357 | |||||
* Statistically significant.
Univariate log-rank and multivariate analyses for Disease-specific and Metastasis-free Survivals in urinary bladder urothelial carcinoma.
| Parameter | Category | Case No. | Disease-specific Survival | Metastasis-free Survival | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Univariate analysis | Multivariate analysis | Univariate analysis | Multivariate analysis | |||||||||
| No. of event | p-value | R.R. | 95% C.I. | p-value | No. of event | p-value | R.R. | 95% C.I. | p-value | |||
| Gender | Male | 216 | 41 | 0.4906 | - | - | - | 61 | 0.2745 | - | - | - |
| Female | 79 | 11 | - | - | - | 16 | - | - | - | |||
| Age (years) | < 65 | 121 | 17 | 0.1315 | - | - | - | 32 | 0.8786 | - | - | - |
| ≥ 65 | 174 | 35 | - | - | - | 45 | ||||||
| Primary tumor (pT) | pTa | 84 | 1 | <0.0001* | 1 | - | <0.001* | 4 | <0.0001* | 1 | - | 0.023* |
| pT1 | 88 | 9 | 4.203 | 0.463-38.147 | 23 | 3.326 | 0.998-11.080 | |||||
| pT2-pT4 | 123 | 42 | 18.697 | 2.142-163.230 | 50 | 5.159 | 1.528-17.418 | |||||
| Nodal metastasis | Negative (pN0) | 266 | 41 | 0.0001* | 1 | - | 0.550 | 61 | <0.0001* | 1 | - | 0.021* |
| Positive (pN1-pN3) | 29 | 11 | 1.242 | 0.610-2.530 | 16 | 2.050 | 1.114-3.773 | |||||
| Histological grade | Low grade | 56 | 2 | 0.0016* | 1 | - | 0.854 | 5 | 0.0007* | 1 | - | 0.924 |
| High grade | 239 | 50 | 1.158 | 0.243-5.518 | 72 | 1.052 | 0.367-3.015 | |||||
| Vascular invasion | Absent | 246 | 37 | 0.0010* | 1 | - | 0.181 | 54 | <0.0001* | 1 | - | 0.665 |
| Present | 49 | 15 | 0.629 | 0.319-1.240 | 23 | 1.141 | 0.630-2.063 | |||||
| Perineural invasion | Absent | 275 | 44 | <0.0001* | 1 | - | 0.009* | 67 | 0.0003* | 1 | - | 0.085 |
| Present | 20 | 8 | 3.004 | 1.313-6.874 | 10 | 1.886 | 0.916-3.881 | |||||
| Mitotic rate (per 10 high power fields) | < 10 | 139 | 12 | 0.0001* | 1 | - | 0.037* | 23 | 0.0002* | 1 | - | 0.086 |
| >= 10 | 156 | 40 | 2.054 | 1.044-4.039 | 54 | 1.572 | 0.938-2.635 | |||||
| THBS2 expression | Low | 147 | 10 | <0.0001* | 1 | - | 0.033* | 18 | <0.0001* | 1 | - | 0.004* |
| High | 148 | 42 | 2.204 | 1.065-4.562 | 59 | 2.275 | 1.307-3.960 | |||||
* Statistically significant.