Literature DB >> 26904152

Forward Stagewise Shrinkage and Addition for High Dimensional Censored Regression.

Zifang Guo1, Wenbin Lu2, Lexin Li3.   

Abstract

Despite enormous development on variable selection approaches in recent years, modeling and selection of high dimensional censored regression remains a challenging question. When the number of predictors p far exceeds the number of observational units n and the outcome is censored, computations of existing solutions often become difficult, or even infeasible in some situations, while performances frequently deteriorate. In this article, we aim at simultaneous model estimation and variable selection for Cox proportional hazards models with high dimensional covariates. We propose a forward stage-wise shrinkage and addition approach for that purpose. Our proposal extends a popular statistical learning technique, the boosting method. It inherits the flexible nature of boosting and is straightforward to extend to nonlinear Cox models. Meanwhile it advances the classical boosting method by adding explicit variable selection and substantially reducing the number of iterations to the algorithm convergence. Our intensive simulations have showed that the new method enjoys a competitive performance in Cox models with both p < n and p ≥ n scenarios. The new method was also illustrated with analysis of two real microarray survival datasets.

Entities:  

Keywords:  Adaptive LASSO; boosting; forward stagewise regression; proportional hazards model; variable selection

Year:  2014        PMID: 26904152      PMCID: PMC4758989          DOI: 10.1007/s12561-014-9114-4

Source DB:  PubMed          Journal:  Stat Biosci        ISSN: 1867-1764


  8 in total

1.  Boosting proportional hazards models using smoothing splines, with applications to high-dimensional microarray data.

Authors:  Hongzhe Li; Yihui Luan
Journal:  Bioinformatics       Date:  2005-02-15       Impact factor: 6.937

2.  Boosting method for nonlinear transformation models with censored survival data.

Authors:  Wenbin Lu; Lexin Li
Journal:  Biostatistics       Date:  2008-03-15       Impact factor: 5.899

3.  Discussion of "Sure Independence Screening for Ultra-High Dimensional Feature Space.

Authors:  Hao Helen Zhang
Journal:  J R Stat Soc Series B Stat Methodol       Date:  2008-11       Impact factor: 4.488

4.  The lasso method for variable selection in the Cox model.

Authors:  R Tibshirani
Journal:  Stat Med       Date:  1997-02-28       Impact factor: 2.373

5.  Cross-validated Cox regression on microarray gene expression data.

Authors:  Hans C van Houwelingen; Tako Bruinsma; Augustinus A M Hart; Laura J Van't Veer; Lodewyk F A Wessels
Journal:  Stat Med       Date:  2006-09-30       Impact factor: 2.373

6.  Regularization Paths for Generalized Linear Models via Coordinate Descent.

Authors:  Jerome Friedman; Trevor Hastie; Rob Tibshirani
Journal:  J Stat Softw       Date:  2010       Impact factor: 6.440

7.  The use of molecular profiling to predict survival after chemotherapy for diffuse large-B-cell lymphoma.

Authors:  Andreas Rosenwald; George Wright; Wing C Chan; Joseph M Connors; Elias Campo; Richard I Fisher; Randy D Gascoyne; H Konrad Muller-Hermelink; Erlend B Smeland; Jena M Giltnane; Elaine M Hurt; Hong Zhao; Lauren Averett; Liming Yang; Wyndham H Wilson; Elaine S Jaffe; Richard Simon; Richard D Klausner; John Powell; Patricia L Duffey; Dan L Longo; Timothy C Greiner; Dennis D Weisenburger; Warren G Sanger; Bhavana J Dave; James C Lynch; Julie Vose; James O Armitage; Emilio Montserrat; Armando López-Guillermo; Thomas M Grogan; Thomas P Miller; Michel LeBlanc; German Ott; Stein Kvaloy; Jan Delabie; Harald Holte; Peter Krajci; Trond Stokke; Louis M Staudt
Journal:  N Engl J Med       Date:  2002-06-20       Impact factor: 91.245

Review 8.  Survival analysis with high-dimensional covariates.

Authors:  Daniela M Witten; Robert Tibshirani
Journal:  Stat Methods Med Res       Date:  2009-08-04       Impact factor: 3.021

  8 in total
  1 in total

Review 1.  An Update on Statistical Boosting in Biomedicine.

Authors:  Andreas Mayr; Benjamin Hofner; Elisabeth Waldmann; Tobias Hepp; Sebastian Meyer; Olaf Gefeller
Journal:  Comput Math Methods Med       Date:  2017-08-02       Impact factor: 2.238

  1 in total

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