Literature DB >> 19654171

Survival analysis with high-dimensional covariates.

Daniela M Witten1, Robert Tibshirani.   

Abstract

In recent years, breakthroughs in biomedical technology have led to a wealth of data in which the number of features (for instance, genes on which expression measurements are available) exceeds the number of observations (e.g. patients). Sometimes survival outcomes are also available for those same observations. In this case, one might be interested in (a) identifying features that are associated with survival (in a univariate sense), and (b) developing a multivariate model for the relationship between the features and survival that can be used to predict survival in a new observation. Due to the high dimensionality of this data, most classical statistical methods for survival analysis cannot be applied directly. Here, we review a number of methods from the literature that address these two problems.

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Year:  2009        PMID: 19654171      PMCID: PMC4806549          DOI: 10.1177/0962280209105024

Source DB:  PubMed          Journal:  Stat Methods Med Res        ISSN: 0962-2802            Impact factor:   3.021


  47 in total

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Review 2.  Microarray data analysis: from disarray to consolidation and consensus.

Authors:  David B Allison; Xiangqin Cui; Grier P Page; Mahyar Sabripour
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3.  Pre-validation and inference in microarrays.

Authors:  Robert J Tibshirani; Brad Efron
Journal:  Stat Appl Genet Mol Biol       Date:  2002-08-22

4.  A genome-wide association study identifies IL23R as an inflammatory bowel disease gene.

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Journal:  Science       Date:  2006-10-26       Impact factor: 47.728

5.  Additive risk models for survival data with high-dimensional covariates.

Authors:  Shuangge Ma; Michael R Kosorok; Jason P Fine
Journal:  Biometrics       Date:  2006-03       Impact factor: 2.571

6.  Multiclass cancer diagnosis using tumor gene expression signatures.

Authors:  S Ramaswamy; P Tamayo; R Rifkin; S Mukherjee; C H Yeang; M Angelo; C Ladd; M Reich; E Latulippe; J P Mesirov; T Poggio; W Gerald; M Loda; E S Lander; T R Golub
Journal:  Proc Natl Acad Sci U S A       Date:  2001-12-11       Impact factor: 11.205

7.  Distinctive gene expression patterns in human mammary epithelial cells and breast cancers.

Authors:  C M Perou; S S Jeffrey; M van de Rijn; C A Rees; M B Eisen; D T Ross; A Pergamenschikov; C F Williams; S X Zhu; J C Lee; D Lashkari; D Shalon; P O Brown; D Botstein
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-03       Impact factor: 11.205

8.  Cluster analysis and display of genome-wide expression patterns.

Authors:  M B Eisen; P T Spellman; P O Brown; D Botstein
Journal:  Proc Natl Acad Sci U S A       Date:  1998-12-08       Impact factor: 11.205

9.  TESTING SIGNIFICANCE OF FEATURES BY LASSOED PRINCIPAL COMPONENTS.

Authors:  Daniela M Witten; Robert Tibshirani
Journal:  Ann Appl Stat       Date:  2008-09-01       Impact factor: 2.083

10.  Supervised harvesting of expression trees.

Authors:  T Hastie; R Tibshirani; D Botstein; P Brown
Journal:  Genome Biol       Date:  2001-01-10       Impact factor: 13.583

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  44 in total

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2.  Sample size requirements for training high-dimensional risk predictors.

Authors:  Kevin K Dobbin; Xiao Song
Journal:  Biostatistics       Date:  2013-07-19       Impact factor: 5.899

3.  High-dimensional, massive sample-size Cox proportional hazards regression for survival analysis.

Authors:  Sushil Mittal; David Madigan; Randall S Burd; Marc A Suchard
Journal:  Biostatistics       Date:  2013-10-04       Impact factor: 5.899

4.  Designing a randomized clinical trial to evaluate personalized medicine: a new approach based on risk prediction.

Authors:  Stuart G Baker; Daniel J Sargent
Journal:  J Natl Cancer Inst       Date:  2010-11-01       Impact factor: 13.506

Review 5.  Predicting genetic predisposition in humans: the promise of whole-genome markers.

Authors:  Gustavo de los Campos; Daniel Gianola; David B Allison
Journal:  Nat Rev Genet       Date:  2010-11-03       Impact factor: 53.242

6.  Forward Stagewise Shrinkage and Addition for High Dimensional Censored Regression.

Authors:  Zifang Guo; Wenbin Lu; Lexin Li
Journal:  Stat Biosci       Date:  2014-04-30

Review 7.  Big data in medical science--a biostatistical view.

Authors:  Harald Binder; Maria Blettner
Journal:  Dtsch Arztebl Int       Date:  2015-02-27       Impact factor: 5.594

8.  Exploring Relationships Among Peripheral Amyloid Beta, Tau, Cytokines, Cognitive Function, and Psychosomatic Symptoms in Breast Cancer Survivors.

Authors:  Ashley Henneghan; Andreana P Haley; Shelli Kesler
Journal:  Biol Res Nurs       Date:  2019-11-10       Impact factor: 2.522

Review 9.  A Tutorial on Evaluating the Time-Varying Discrimination Accuracy of Survival Models Used in Dynamic Decision Making.

Authors:  Aasthaa Bansal; Patrick J Heagerty
Journal:  Med Decis Making       Date:  2018-10-14       Impact factor: 2.583

10.  CT texture features of liver parenchyma for predicting development of metastatic disease and overall survival in patients with colorectal cancer.

Authors:  Scott J Lee; Ryan Zea; David H Kim; Meghan G Lubner; Dustin A Deming; Perry J Pickhardt
Journal:  Eur Radiol       Date:  2017-11-21       Impact factor: 5.315

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