Literature DB >> 20808728

Regularization Paths for Generalized Linear Models via Coordinate Descent.

Jerome Friedman1, Trevor Hastie, Rob Tibshirani.   

Abstract

We develop fast algorithms for estimation of generalized linear models with convex penalties. The models include linear regression, two-class logistic regression, and multinomial regression problems while the penalties include ℓ(1) (the lasso), ℓ(2) (ridge regression) and mixtures of the two (the elastic net). The algorithms use cyclical coordinate descent, computed along a regularization path. The methods can handle large problems and can also deal efficiently with sparse features. In comparative timings we find that the new algorithms are considerably faster than competing methods.

Entities:  

Year:  2010        PMID: 20808728      PMCID: PMC2929880     

Source DB:  PubMed          Journal:  J Stat Softw        ISSN: 1548-7660            Impact factor:   6.440


  9 in total

1.  A simple and efficient algorithm for gene selection using sparse logistic regression.

Authors:  S K Shevade; S S Keerthi
Journal:  Bioinformatics       Date:  2003-11-22       Impact factor: 6.937

2.  Sparse multinomial logistic regression: fast algorithms and generalization bounds.

Authors:  Balaji Krishnapuram; Lawrence Carin; Mário A T Figueiredo; Alexander J Hartemink
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2005-06       Impact factor: 6.226

3.  Sparse inverse covariance estimation with the graphical lasso.

Authors:  Jerome Friedman; Trevor Hastie; Robert Tibshirani
Journal:  Biostatistics       Date:  2007-12-12       Impact factor: 5.899

4.  Genome-wide association analysis by lasso penalized logistic regression.

Authors:  Tong Tong Wu; Yi Fang Chen; Trevor Hastie; Eric Sobel; Kenneth Lange
Journal:  Bioinformatics       Date:  2009-01-28       Impact factor: 6.937

5.  The lasso method for variable selection in the Cox model.

Authors:  R Tibshirani
Journal:  Stat Med       Date:  1997-02-28       Impact factor: 2.373

6.  Multiclass cancer diagnosis using tumor gene expression signatures.

Authors:  S Ramaswamy; P Tamayo; R Rifkin; S Mukherjee; C H Yeang; M Angelo; C Ladd; M Reich; E Latulippe; J P Mesirov; T Poggio; W Gerald; M Loda; E S Lander; T R Golub
Journal:  Proc Natl Acad Sci U S A       Date:  2001-12-11       Impact factor: 11.205

7.  Molecular classification of cancer: class discovery and class prediction by gene expression monitoring.

Authors:  T R Golub; D K Slonim; P Tamayo; C Huard; M Gaasenbeek; J P Mesirov; H Coller; M L Loh; J R Downing; M A Caligiuri; C D Bloomfield; E S Lander
Journal:  Science       Date:  1999-10-15       Impact factor: 47.728

8.  Classification of gene microarrays by penalized logistic regression.

Authors:  Ji Zhu; Trevor Hastie
Journal:  Biostatistics       Date:  2004-07       Impact factor: 5.899

9.  BagBoosting for tumor classification with gene expression data.

Authors:  Marcel Dettling
Journal:  Bioinformatics       Date:  2004-10-05       Impact factor: 6.937

  9 in total
  2000 in total

1.  Lasso regularization for left-censored Gaussian outcome and high-dimensional predictors.

Authors:  Perrine Soret; Marta Avalos; Linda Wittkop; Daniel Commenges; Rodolphe Thiébaut
Journal:  BMC Med Res Methodol       Date:  2018-12-04       Impact factor: 4.615

2.  Accounting for network effects in neuronal responses using L1 regularized point process models.

Authors:  Ryan C Kelly; Robert E Kass; Matthew A Smith; Tai Sing Lee
Journal:  Adv Neural Inf Process Syst       Date:  2010

3.  Predicting suicides after psychiatric hospitalization in US Army soldiers: the Army Study To Assess Risk and rEsilience in Servicemembers (Army STARRS).

Authors:  Ronald C Kessler; Christopher H Warner; Christopher Ivany; Maria V Petukhova; Sherri Rose; Evelyn J Bromet; Millard Brown; Tianxi Cai; Lisa J Colpe; Kenneth L Cox; Carol S Fullerton; Stephen E Gilman; Michael J Gruber; Steven G Heeringa; Lisa Lewandowski-Romps; Junlong Li; Amy M Millikan-Bell; James A Naifeh; Matthew K Nock; Anthony J Rosellini; Nancy A Sampson; Michael Schoenbaum; Murray B Stein; Simon Wessely; Alan M Zaslavsky; Robert J Ursano
Journal:  JAMA Psychiatry       Date:  2015-01       Impact factor: 21.596

4.  Serum biomarkers associated with baseline clinical severity in young steroid-naïve Duchenne muscular dystrophy boys.

Authors:  Utkarsh J Dang; Michael Ziemba; Paula R Clemens; Yetrib Hathout; Laurie S Conklin; Eric P Hoffman
Journal:  Hum Mol Genet       Date:  2020-08-29       Impact factor: 6.150

5.  Spatial Multiresolution Analysis of the Effect of PM2.5 on Birth Weights.

Authors:  Joseph Antonelli; Joel Schwartz; Itai Kloog; Brent A Coull
Journal:  Ann Appl Stat       Date:  2017-07-20       Impact factor: 2.083

6.  A statistical model of Rift Valley fever activity in Egypt.

Authors:  John M Drake; Ali N Hassan; John C Beier
Journal:  J Vector Ecol       Date:  2013-12       Impact factor: 1.671

7.  A novel patient-centered "intention-to-treat" metric of U.S. lung transplant center performance.

Authors:  Dawn A Maldonado; Arindam RoyChoudhury; David J Lederer
Journal:  Am J Transplant       Date:  2017-09-26       Impact factor: 8.086

8.  Associations between lipids in selected brain regions, plasma miRNA, and behavioral and cognitive measures following 28Si ion irradiation.

Authors:  Jessica Minnier; Mark R Emmett; Ruby Perez; Liang-Hao Ding; Brooke L Barnette; Rianna E Larios; Changjin Hong; Tae Hyun Hwang; Yongjia Yu; Christina M Fallgren; Michael D Story; Michael M Weil; Jacob Raber
Journal:  Sci Rep       Date:  2021-07-21       Impact factor: 4.379

9.  A sparse Ising model with covariates.

Authors:  Jie Cheng; Elizaveta Levina; Pei Wang; Ji Zhu
Journal:  Biometrics       Date:  2014-08-05       Impact factor: 2.571

10.  The TEACHH model to predict life expectancy in patients presenting for palliative spine radiotherapy: external validation and comparison with alternate models.

Authors:  Maryam Dosani; Scott Tyldesley; Brendan Bakos; Jeremy Hamm; Tim Kong; Sarah Lucas; Jordan Wong; Mitchell Liu; Sarah Hamilton
Journal:  Support Care Cancer       Date:  2018-02-01       Impact factor: 3.603

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