Literature DB >> 16143967

Cross-validated Cox regression on microarray gene expression data.

Hans C van Houwelingen1, Tako Bruinsma, Augustinus A M Hart, Laura J Van't Veer, Lodewyk F A Wessels.   

Abstract

This paper describes how penalized Cox regression, in combination with cross-validated partial likelihood can be employed to obtain reliable survival prediction models for high dimensional microarray data. The suggested procedure is demonstrated on a breast cancer survival data set consisting of 295 tumours as collected in the National Cancer Institute in Amsterdam and previously reported in more general papers. The main aim of this paper it to show how generally accepted biostatistical procedures can be employed to analyse high-dimensional data.

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Year:  2006        PMID: 16143967     DOI: 10.1002/sim.2353

Source DB:  PubMed          Journal:  Stat Med        ISSN: 0277-6715            Impact factor:   2.373


  45 in total

1.  Censored Rank Independence Screening for High-dimensional Survival Data.

Authors:  Rui Song; Wenbin Lu; Shuangge Ma; X Jessie Jeng
Journal:  Biometrika       Date:  2014       Impact factor: 2.445

2.  Partial least squares Cox regression for genome-wide data.

Authors:  Ståle Nygård; Ornulf Borgan; Ole Christian Lingjaerde; Hege Leite Størvold
Journal:  Lifetime Data Anal       Date:  2008-06       Impact factor: 1.588

3.  The additive hazards model with high-dimensional regressors.

Authors:  Torben Martinussen; Thomas H Scheike
Journal:  Lifetime Data Anal       Date:  2009-01-28       Impact factor: 1.588

4.  Efficient ℓ0 -norm feature selection based on augmented and penalized minimization.

Authors:  Xiang Li; Shanghong Xie; Donglin Zeng; Yuanjia Wang
Journal:  Stat Med       Date:  2017-10-30       Impact factor: 2.373

5.  Pathway-Structured Predictive Model for Cancer Survival Prediction: A Two-Stage Approach.

Authors:  Xinyan Zhang; Yan Li; Tomi Akinyemiju; Akinyemi I Ojesina; Phillip Buckhaults; Nianjun Liu; Bo Xu; Nengjun Yi
Journal:  Genetics       Date:  2016-11-09       Impact factor: 4.562

6.  Survival prediction and gene identification with penalized global AUC maximization.

Authors:  Zhenqiu Liu; Ronald B Gartenhaus; Xue-Wen Chen; Charles D Howell; Ming Tan
Journal:  J Comput Biol       Date:  2009-12       Impact factor: 1.479

7.  Forward Stagewise Shrinkage and Addition for High Dimensional Censored Regression.

Authors:  Zifang Guo; Wenbin Lu; Lexin Li
Journal:  Stat Biosci       Date:  2014-04-30

8.  Using cross-validation to evaluate predictive accuracy of survival risk classifiers based on high-dimensional data.

Authors:  Richard M Simon; Jyothi Subramanian; Ming-Chung Li; Supriya Menezes
Journal:  Brief Bioinform       Date:  2011-02-15       Impact factor: 11.622

9.  Survival associated pathway identification with group Lp penalized global AUC maximization.

Authors:  Zhenqiu Liu; Laurence S Magder; Terry Hyslop; Li Mao
Journal:  Algorithms Mol Biol       Date:  2010-08-16       Impact factor: 1.405

10.  Survival prediction from clinico-genomic models--a comparative study.

Authors:  Hege M Bøvelstad; Ståle Nygård; Ornulf Borgan
Journal:  BMC Bioinformatics       Date:  2009-12-13       Impact factor: 3.169

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