Literature DB >> 22129832

Dynamics and mechanisms of coupled protein folding and binding reactions.

Thomas Kiefhaber1, Annett Bachmann, Kristine Steen Jensen.   

Abstract

Protein folding coupled to binding of a specific ligand is frequently observed in biological processes. In recent years numerous studies have addressed the structural properties of the unfolded proteins in the absence of their ligands. Surprisingly few time-resolved investigations on coupled folding and binding reactions have been published up to date and the dynamics and kinetic mechanisms of these processes are still only poorly understood. Especially, it is still unsolved for most systems which conformation of the protein is recognized by the ligand (conformational selection vs. folding-after-binding) and whether the ligand influences the folding kinetics. Here we review experimental methods, kinetic models and time-resolved experimental studies of coupled folding and binding reactions. Copyright Â
© 2011. Published by Elsevier Ltd.

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Year:  2011        PMID: 22129832     DOI: 10.1016/j.sbi.2011.09.010

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  64 in total

Review 1.  Modeling for (physical) biologists: an introduction to the rule-based approach.

Authors:  Lily A Chylek; Leonard A Harris; James R Faeder; William S Hlavacek
Journal:  Phys Biol       Date:  2015-07-16       Impact factor: 2.583

2.  Structural disorder of folded proteins: isotope-edited 2D IR spectroscopy and Markov state modeling.

Authors:  Carlos R Baiz; Andrei Tokmakoff
Journal:  Biophys J       Date:  2015-04-07       Impact factor: 4.033

3.  Interplay between partner and ligand facilitates the folding and binding of an intrinsically disordered protein.

Authors:  Joseph M Rogers; Vladimiras Oleinikovas; Sarah L Shammas; Chi T Wong; David De Sancho; Christopher M Baker; Jane Clarke
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-13       Impact factor: 11.205

4.  Conformational kinetics reveals affinities of protein conformational states.

Authors:  Kyle G Daniels; Yang Suo; Terrence G Oas
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-10       Impact factor: 11.205

5.  Structural Characterization of N-WASP Domain V Using MD Simulations with NMR and SAXS Data.

Authors:  Maud Chan-Yao-Chong; Célia Deville; Louise Pinet; Carine van Heijenoort; Dominique Durand; Tâp Ha-Duong
Journal:  Biophys J       Date:  2019-02-26       Impact factor: 4.033

6.  Adaptation of the bound intrinsically disordered protein YAP to mutations at the YAP:TEAD interface.

Authors:  Yannick Mesrouze; Fedir Bokhovchuk; Aude Izaac; Marco Meyerhofer; Catherine Zimmermann; Patrizia Fontana; Tobias Schmelzle; Dirk Erdmann; Pascal Furet; Joerg Kallen; Patrick Chène
Journal:  Protein Sci       Date:  2018-10       Impact factor: 6.725

Review 7.  Structural metamorphism and polymorphism in proteins on the brink of thermodynamic stability.

Authors:  Prakash Kulkarni; Tsega L Solomon; Yanan He; Yihong Chen; Philip N Bryan; John Orban
Journal:  Protein Sci       Date:  2018-09-24       Impact factor: 6.725

8.  Slow, reversible, coupled folding and binding of the spectrin tetramerization domain.

Authors:  S L Shammas; J M Rogers; S A Hill; J Clarke
Journal:  Biophys J       Date:  2012-11-20       Impact factor: 4.033

9.  Stepwise protein folding at near amino acid resolution by hydrogen exchange and mass spectrometry.

Authors:  Wenbing Hu; Benjamin T Walters; Zhong-Yuan Kan; Leland Mayne; Laura E Rosen; Susan Marqusee; S Walter Englander
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-19       Impact factor: 11.205

10.  The Streptococcus gordonii Adhesin CshA Protein Binds Host Fibronectin via a Catch-Clamp Mechanism.

Authors:  Catherine R Back; Maryta N Sztukowska; Marisa Till; Richard J Lamont; Howard F Jenkinson; Angela H Nobbs; Paul R Race
Journal:  J Biol Chem       Date:  2016-12-05       Impact factor: 5.157

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