Literature DB >> 32209492

Compact expressions for R1ρ relaxation for N-site chemical exchange using Schur decomposition.

Mark Rance1, Arthur G Palmer2.   

Abstract

The rotating-frame spin relaxation rate constant, R1ρ, is a powerful probe of macromolecular chemical and conformational dynamics in relaxation dispersion, CEST, and DEST NMR experiments. The R1ρ relaxation rate constant is given by the absolute value of the largest (least negative) eigenvalue of the Bloch-McConnell evolution matrix; however, estimation of this eigenvalue require inversion of 3 N × 3 N dimensional matrices, in which N is the number of interconverting sites or states for a given nuclear spin in a molecule. The Schur complement is used to reduce the problem of calculating the characteristic polynomial of a 3 N × 3 N matrix to that of calculating the characteristic polynomial of a 3 × 3 matrix. The resulting expressions for N-site chemical exchange are more numerically tractable, because the largest matrix inversion also is of dimension 3 × 3. In addition, the simplifications offered by the Schurr complement conveniently illustrate the effects of fast or slow kinetic steps within an N-site kinetic topology.
Copyright © 2020 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Bloch-McConnell equation; Conformational exchange; Dynamics; NMR spectroscopy; Relaxation dispersion; Rotating-frame relaxation

Year:  2020        PMID: 32209492      PMCID: PMC7455919          DOI: 10.1016/j.jmr.2020.106705

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  15 in total

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7.  General expressions for R1ρ relaxation for N-site chemical exchange and the special case of linear chains.

Authors:  Hans Koss; Mark Rance; Arthur G Palmer
Journal:  J Magn Reson       Date:  2016-10-27       Impact factor: 2.229

8.  Disulfide bond isomerization in basic pancreatic trypsin inhibitor: multisite chemical exchange quantified by CPMG relaxation dispersion and chemical shift modeling.

Authors:  Michael J Grey; Chunyu Wang; Arthur G Palmer
Journal:  J Am Chem Soc       Date:  2003-11-26       Impact factor: 15.419

9.  The feasibility of parameterizing four-state equilibria using relaxation dispersion measurements.

Authors:  Pilong Li; Ilídio R S Martins; Michael K Rosen
Journal:  J Biomol NMR       Date:  2011-09-27       Impact factor: 2.835

10.  The folding pathway of an FF domain: characterization of an on-pathway intermediate state under folding conditions by (15)N, (13)C(alpha) and (13)C-methyl relaxation dispersion and (1)H/(2)H-exchange NMR spectroscopy.

Authors:  Dmitry M Korzhnev; Tomasz L Religa; Patrik Lundström; Alan R Fersht; Lewis E Kay
Journal:  J Mol Biol       Date:  2007-06-09       Impact factor: 5.469

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