Literature DB >> 26859771

The energetics of anabolism in natural settings.

Douglas E LaRowe1, Jan P Amend1,2.   

Abstract

The environmental conditions that describe an ecosystem define the amount of energy available to the resident organisms and the amount of energy required to build biomass. Here, we quantify the amount of energy required to make biomass as a function of temperature, pressure, redox state, the sources of C, N and S, cell mass and the time that an organism requires to double or replace its biomass. Specifically, these energetics are calculated from 0 to 125 °C, 0.1 to 500 MPa and -0.38 to +0.86 V using CO2, acetate or CH4 for C, NO3(-) or NH4(+) for N and SO4(2-) or HS(-) for S. The amounts of energy associated with synthesizing the biomolecules that make up a cell, which varies over 39 kJ (g cell)(-1), are then used to compute energy-based yield coefficients for a vast range of environmental conditions. Taken together, environmental variables and the range of cell sizes leads to a ~4 orders of magnitude difference between the number of microbial cells that can be made from a Joule of Gibbs energy under the most (5.06 × 10(11) cells J(-1)) and least (5.21 × 10(7) cells J(-1)) ideal conditions. When doubling/replacement time is taken into account, the range of anabolism energies can expand even further.

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Year:  2016        PMID: 26859771      PMCID: PMC5029197          DOI: 10.1038/ismej.2015.227

Source DB:  PubMed          Journal:  ISME J        ISSN: 1751-7362            Impact factor:   10.302


  28 in total

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Journal:  Extremophiles       Date:  2006-03-21       Impact factor: 2.395

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Review 5.  The energetics of organic synthesis inside and outside the cell.

Authors:  Jan P Amend; Douglas E LaRowe; Thomas M McCollom; Everett L Shock
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-06-10       Impact factor: 6.237

Review 6.  Microbial ecology of the dark ocean above, at, and below the seafloor.

Authors:  Beth N Orcutt; Jason B Sylvan; Nina J Knab; Katrina J Edwards
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Review 7.  Microbial life under extreme energy limitation.

Authors:  Tori M Hoehler; Bo Barker Jørgensen
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8.  Elemental composition (C, N, P) and cell volume of exponentially growing and nutrient-limited bacterioplankton.

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Journal:  Appl Environ Microbiol       Date:  2002-06       Impact factor: 4.792

9.  Thermodynamic potential for the abiotic synthesis of adenine, cytosine, guanine, thymine, uracil, ribose, and deoxyribose in hydrothermal systems.

Authors:  Douglas E LaRowe; Pierre Regnier
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10.  Biosphere frontiers of subsurface life in the sedimented hydrothermal system of Guaymas Basin.

Authors:  Andreas Teske; Amy V Callaghan; Douglas E LaRowe
Journal:  Front Microbiol       Date:  2014-07-31       Impact factor: 5.640

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  10 in total

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Authors:  P M Higgins; C S Cockell
Journal:  J R Soc Interface       Date:  2020-10-21       Impact factor: 4.118

2.  Interacting Bioenergetic and Stoichiometric Controls on Microbial Growth.

Authors:  Arjun Chakrawal; Salvatore Calabrese; Anke M Herrmann; Stefano Manzoni
Journal:  Front Microbiol       Date:  2022-05-17       Impact factor: 6.064

3.  Maintenance power requirements of anammox bacteria "Candidatus Brocadia sinica" and "Candidatus Scalindua sp."

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4.  Ecophysiology of the Cosmopolitan OM252 Bacterioplankton (Gammaproteobacteria).

Authors:  Emily R Savoie; V Celeste Lanclos; Michael W Henson; Chuankai Cheng; Eric W Getz; Shelby J Barnes; Douglas E LaRowe; Michael S Rappé; J Cameron Thrash
Journal:  mSystems       Date:  2021-06-29       Impact factor: 6.496

5.  MbT-Tool: An open-access tool based on Thermodynamic Electron Equivalents Model to obtain microbial-metabolic reactions to be used in biotechnological process.

Authors:  Pablo Granda Araujo; Anna Gras; Marta Ginovart
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6.  The Energetic Potential for Undiscovered Manganese Metabolisms in Nature.

Authors:  Douglas E LaRowe; Harold K Carlson; Jan P Amend
Journal:  Front Microbiol       Date:  2021-06-09       Impact factor: 5.640

7.  Nanocalorimetric Characterization of Microbial Activity in Deep Subsurface Oceanic Crustal Fluids.

Authors:  Alberto Robador; Douglas E LaRowe; Sean P Jungbluth; Huei-Ting Lin; Michael S Rappé; Kenneth H Nealson; Jan P Amend
Journal:  Front Microbiol       Date:  2016-04-05       Impact factor: 5.640

Review 8.  Capturing the genetic makeup of the active microbiome in situ.

Authors:  Esther Singer; Michael Wagner; Tanja Woyke
Journal:  ISME J       Date:  2017-06-02       Impact factor: 10.302

9.  Bioenergetic Controls on Microbial Ecophysiology in Marine Sediments.

Authors:  James A Bradley; Jan P Amend; Douglas E LaRowe
Journal:  Front Microbiol       Date:  2018-02-13       Impact factor: 5.640

10.  Representing Organic Matter Thermodynamics in Biogeochemical Reactions via Substrate-Explicit Modeling.

Authors:  Hyun-Seob Song; James C Stegen; Emily B Graham; Joon-Yong Lee; Vanessa A Garayburu-Caruso; William C Nelson; Xingyuan Chen; J David Moulton; Timothy D Scheibe
Journal:  Front Microbiol       Date:  2020-10-23       Impact factor: 5.640

  10 in total

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