Literature DB >> 18574710

Thermodynamic potential for the abiotic synthesis of adenine, cytosine, guanine, thymine, uracil, ribose, and deoxyribose in hydrothermal systems.

Douglas E LaRowe1, Pierre Regnier.   

Abstract

The thermodynamic potential for the abiotic synthesis of the five common nucleobases (adenine, cytosine, guanine, thymine, and uracil) and two monosaccharides (ribose and deoxyribose) from formaldehyde and hydrogen cyanide has been quantified under temperature, pressure, and bulk composition conditions that are representative of hydrothermal systems. The activities of the precursor molecules (formaldehyde and hydrogen cyanide) required to evaluate the thermodynamics of biomolecule synthesis were computed using the concentrations of aqueous N2, CO, CO2 and H2 reported in the modern Rainbow hydrothermal system. The concentrations of precursor molecules that can be synthesized are strongly dependent on temperature with larger concentrations prevailing at lower temperatures. Similarly, the thermodynamic drive to synthesize nucleobases, ribose and deoxyribose varies considerably as a function of temperature: all of the biomolecules considered in this study are thermodynamically favored to be synthesized throughout the temperature range from 0 degrees C to between 150 degrees C and 250 degrees C, depending on the biomolecule. Furthermore, activity diagrams have been generated to illustrate that activities in the range of 10(-2)- 10(-6) for nucleobases, ribose and deoxyribose can be in equilibrium with a range of precursor molecule activities at 150 degrees C and 500 bars. The results presented here support the notion that hydrothermal systems could have played a fundamental role in the origin of life, and can be used to plan and constrain experimental investigation of the abiotic synthesis of nucleic-acid related biomolecules.

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Year:  2008        PMID: 18574710     DOI: 10.1007/s11084-008-9137-2

Source DB:  PubMed          Journal:  Orig Life Evol Biosph        ISSN: 0169-6149            Impact factor:   1.950


  38 in total

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Authors:  N G Holm; E M Andersson
Journal:  Planet Space Sci       Date:  1995 Jan-Feb       Impact factor: 2.030

2.  Summary and implications of reported amino acid concentrations in the Murchison meteorite

Authors:  E L Shock; M D Schulte
Journal:  Geochim Cosmochim Acta       Date:  1990-11       Impact factor: 5.010

3.  Lipid synthesis under hydrothermal conditions by Fischer-Tropsch-type reactions.

Authors:  T M McCollom; G Ritter; B R Simoneit
Journal:  Orig Life Evol Biosph       Date:  1999-03       Impact factor: 1.950

4.  The mechanism of synthesis of amino acids by electric discharges.

Authors:  S L MILLER
Journal:  Biochim Biophys Acta       Date:  1957-03

5.  Abiotic synthesis of amino acids under hydrothermal conditions and the origin of life: a perpetual phenomenon?

Authors:  R J Hennet; N G Holm; M H Engel
Journal:  Naturwissenschaften       Date:  1992-08

6.  Hydrothermal processing of cometary volatiles--applications to Triton.

Authors:  E L Shock; W B McKinnon
Journal:  Icarus       Date:  1993       Impact factor: 3.508

7.  Hydrocarbons in hydrothermal vent fluids: the role of chromium-bearing catalysts.

Authors:  Dionysis I Foustoukos; William E Seyfried
Journal:  Science       Date:  2004-04-01       Impact factor: 47.728

8.  Prebiotic ribose synthesis: a critical analysis.

Authors:  R Shapiro
Journal:  Orig Life Evol Biosph       Date:  1988       Impact factor: 1.950

9.  Synthesis of adenine from HCN tetramer and ammonium formate.

Authors:  Aubrey Hill; Leslie E Orgel
Journal:  Orig Life Evol Biosph       Date:  2002-04       Impact factor: 1.950

Review 10.  Prebiotic chemistry and the origin of the RNA world.

Authors:  Leslie E Orgel
Journal:  Crit Rev Biochem Mol Biol       Date:  2004 Mar-Apr       Impact factor: 8.250

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  12 in total

1.  The energetics of anabolism in natural settings.

Authors:  Douglas E LaRowe; Jan P Amend
Journal:  ISME J       Date:  2016-02-09       Impact factor: 10.302

Review 2.  The energetics of organic synthesis inside and outside the cell.

Authors:  Jan P Amend; Douglas E LaRowe; Thomas M McCollom; Everett L Shock
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-06-10       Impact factor: 6.237

3.  Adsorption of adenine and thymine on zeolites: FT-IR and EPR spectroscopy and X-ray diffractometry and SEM studies.

Authors:  João Paulo T Baú; Cristine E A Carneiro; Ivan G de Souza Junior; Cláudio M D de Souza; Antonio C S da Costa; Eduardo di Mauro; Cássia T B V Zaia; Joaquin Coronas; Clara Casado; Henrique de Santana; Dimas A M Zaia
Journal:  Orig Life Evol Biosph       Date:  2011-10-20       Impact factor: 1.950

4.  Accelerated reaction simulations: A virtual squeeze on chemistry.

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Journal:  Nat Chem       Date:  2014-12       Impact factor: 24.427

5.  A Prebiotic Chemistry Experiment on the Adsorption of Nucleic Acids Bases onto a Natural Zeolite.

Authors:  Pedro R Anizelli; João Paulo T Baú; Frederico P Gomes; Antonio Carlos S da Costa; Cristine E A Carneiro; Cássia Thaïs B V Zaia; Dimas A M Zaia
Journal:  Orig Life Evol Biosph       Date:  2015-03-10       Impact factor: 1.950

6.  Adsorption of adenine, cytosine, thymine, and uracil on sulfide-modified montmorillonite: FT-IR, Mössbauer and EPR spectroscopy and X-ray diffractometry studies.

Authors:  Cristine E A Carneiro; Graciele Berndt; Ivan G de Souza Junior; Cláudio M D de Souza; Andrea Paesano; Antonio C S da Costa; Eduardo di Mauro; Henrique de Santana; Cássia T B V Zaia; Dimas A M Zaia
Journal:  Orig Life Evol Biosph       Date:  2011-06-30       Impact factor: 1.950

7.  Sulfidic Anion Concentrations on Early Earth for Surficial Origins-of-Life Chemistry.

Authors:  Sukrit Ranjan; Zoe R Todd; John D Sutherland; Dimitar D Sasselov
Journal:  Astrobiology       Date:  2018-04-08       Impact factor: 4.335

8.  Organic analysis of peridotite rocks from the Ashadze and Logatchev hydrothermal sites.

Authors:  Marie-Paule Bassez; Yoshinori Takano; Naohiko Ohkouchi
Journal:  Int J Mol Sci       Date:  2009-07-03       Impact factor: 6.208

9.  Reduction of nitrogen compounds in oceanic basement and its implications for HCN formation and abiotic organic synthesis.

Authors:  Nils G Holm; Anna Neubeck
Journal:  Geochem Trans       Date:  2009-10-22       Impact factor: 4.737

10.  The Energetic Potential for Undiscovered Manganese Metabolisms in Nature.

Authors:  Douglas E LaRowe; Harold K Carlson; Jan P Amend
Journal:  Front Microbiol       Date:  2021-06-09       Impact factor: 5.640

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