Literature DB >> 23321532

Microbial life under extreme energy limitation.

Tori M Hoehler1, Bo Barker Jørgensen.   

Abstract

A great number of the bacteria and archaea on Earth are found in subsurface environments in a physiological state that is poorly represented or explained by laboratory cultures. Microbial cells in these very stable and oligotrophic settings catabolize 10⁴- to 10⁶-fold more slowly than model organisms in nutrient-rich cultures, turn over biomass on timescales of centuries to millennia rather than hours to days, and subsist with energy fluxes that are 1,000-fold lower than the typical culture-based estimates of maintenance requirements. To reconcile this disparate state of being with our knowledge of microbial physiology will require a revised understanding of microbial energy requirements, including identifying the factors that comprise true basal maintenance and the adaptations that might serve to minimize these factors.

Mesh:

Year:  2013        PMID: 23321532     DOI: 10.1038/nrmicro2939

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  89 in total

1.  Community size and metabolic rates of psychrophilic sulfate-reducing bacteria in Arctic marine sediments.

Authors:  C Knoblauch; B B Jørgensen; J Harder
Journal:  Appl Environ Microbiol       Date:  1999-09       Impact factor: 4.792

2.  A microfluidic chemostat for experiments with bacterial and yeast cells.

Authors:  Alex Groisman; Caroline Lobo; HoJung Cho; J Kyle Campbell; Yann S Dufour; Ann M Stevens; Andre Levchenko
Journal:  Nat Methods       Date:  2005-09       Impact factor: 28.547

3.  Deep sub-seafloor prokaryotes stimulated at interfaces over geological time.

Authors:  R John Parkes; Gordon Webster; Barry A Cragg; Andrew J Weightman; Carole J Newberry; Timothy G Ferdelman; Jens Kallmeyer; Bo B Jørgensen; Ivano W Aiello; John C Fry
Journal:  Nature       Date:  2005-07-21       Impact factor: 49.962

4.  Quantification of microbial communities in near-surface and deeply buried marine sediments on the Peru continental margin using real-time PCR.

Authors:  Axel Schippers; Lev N Neretin
Journal:  Environ Microbiol       Date:  2006-07       Impact factor: 5.491

5.  Ancient bacteria show evidence of DNA repair.

Authors:  Sarah Stewart Johnson; Martin B Hebsgaard; Torben R Christensen; Mikhail Mastepanov; Rasmus Nielsen; Kasper Munch; Tina Brand; M Thomas P Gilbert; Maria T Zuber; Michael Bunce; Regin Rønn; David Gilichinsky; Duane Froese; Eske Willerslev
Journal:  Proc Natl Acad Sci U S A       Date:  2007-08-29       Impact factor: 11.205

6.  Ion permeability of the cytoplasmic membrane limits the maximum growth temperature of bacteria and archaea.

Authors:  J L van de Vossenberg; T Ubbink-Kok; M G Elferink; A J Driessen; W N Konings
Journal:  Mol Microbiol       Date:  1995-12       Impact factor: 3.501

7.  Aerobic microbial respiration in 86-million-year-old deep-sea red clay.

Authors:  Hans Røy; Jens Kallmeyer; Rishi Ram Adhikari; Robert Pockalny; Bo Barker Jørgensen; Steven D'Hondt
Journal:  Science       Date:  2012-05-18       Impact factor: 47.728

8.  Energy-spilling reactions of Streptococcus bovis and resistance of its membrane to proton conductance.

Authors:  G M Cook; J B Russell
Journal:  Appl Environ Microbiol       Date:  1994-06       Impact factor: 4.792

9.  A theoretical study on the amount of ATP required for synthesis of microbial cell material.

Authors:  A H Stouthamer
Journal:  Antonie Van Leeuwenhoek       Date:  1973       Impact factor: 2.271

10.  The growth advantage in stationary-phase phenotype conferred by rpoS mutations is dependent on the pH and nutrient environment.

Authors:  Michael J Farrell; Steven E Finkel
Journal:  J Bacteriol       Date:  2003-12       Impact factor: 3.490

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  180 in total

Review 1.  Possibilities for extremophilic microorganisms in microbial electrochemical systems.

Authors:  Mark Dopson; Gaofeng Ni; Tom H J A Sleutels
Journal:  FEMS Microbiol Rev       Date:  2015-10-15       Impact factor: 16.408

2.  The energetics of anabolism in natural settings.

Authors:  Douglas E LaRowe; Jan P Amend
Journal:  ISME J       Date:  2016-02-09       Impact factor: 10.302

3.  Aerobically respiring prokaryotic strains exhibit a broader temperature-pH-salinity space for cell division than anaerobically respiring and fermentative strains.

Authors:  Jesse P Harrison; Luke Dobinson; Kenneth Freeman; Ross McKenzie; Dale Wyllie; Sophie L Nixon; Charles S Cockell
Journal:  J R Soc Interface       Date:  2015-09-06       Impact factor: 4.118

4.  Gene expression in the deep biosphere.

Authors:  William D Orsi; Virginia P Edgcomb; Glenn D Christman; Jennifer F Biddle
Journal:  Nature       Date:  2013-06-12       Impact factor: 49.962

5.  Transcriptional response of the archaeal ammonia oxidizer Nitrosopumilus maritimus to low and environmentally relevant ammonia concentrations.

Authors:  Tatsunori Nakagawa; David A Stahl
Journal:  Appl Environ Microbiol       Date:  2013-08-30       Impact factor: 4.792

6.  Meta-analysis of quantification methods shows that archaea and bacteria have similar abundances in the subseafloor.

Authors:  Karen G Lloyd; Megan K May; Richard T Kevorkian; Andrew D Steen
Journal:  Appl Environ Microbiol       Date:  2013-10-04       Impact factor: 4.792

7.  Heterotrophic communities supplied by ancient organic carbon predominate in deep fennoscandian bedrock fluids.

Authors:  Lotta Purkamo; Malin Bomberg; Mari Nyyssönen; Ilmo Kukkonen; Lasse Ahonen; Merja Itävaara
Journal:  Microb Ecol       Date:  2014-09-27       Impact factor: 4.552

Review 8.  The Potential for Redox-Active Metabolites To Enhance or Unlock Anaerobic Survival Metabolisms in Aerobes.

Authors:  John A Ciemniecki; Dianne K Newman
Journal:  J Bacteriol       Date:  2020-05-11       Impact factor: 3.490

9.  Predictive isotope model connects microbes in culture and nature.

Authors:  Shuhei Ono; Min Sub Sim; Tanja Bosak
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-05       Impact factor: 11.205

Review 10.  Physiological limits to life in anoxic subseafloor sediment.

Authors:  William D Orsi; Bernhard Schink; Wolfgang Buckel; William F Martin
Journal:  FEMS Microbiol Rev       Date:  2020-03-01       Impact factor: 16.408

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