Literature DB >> 33081642

A bioenergetic model to predict habitability, biomass and biosignatures in astrobiology and extreme conditions.

P M Higgins1, C S Cockell1.   

Abstract

In order to grow, reproduce and evolve life requires a supply of energy and nutrients. Astrobiology has the challenge of studying life on Earth in environments which are poorly characterized or extreme, usually both, and predicting the habitability of extraterrestrial environments. We have developed a general astrobiological model for assessing the energetic and nutrient availability of poorly characterized environments to predict their potential biological productivity. NutMEG (nutrients, maintenance, energy and growth) can be used to estimate how much biomass an environment could host, and how that life might affect the local chemistry. It requires only an overall catabolic reaction and some knowledge of the local environment to begin making estimations, with many more customizable parameters, such as microbial adaptation. In this study, the model was configured to replicate laboratory data on the growth of methanogens. It was used to predict the effect of temperature and energy/nutrient limitation on their microbial growth rates, total biomass levels, and total biosignature production in laboratory-like conditions to explore how it could be applied to astrobiological problems. As temperature rises from 280 to 330 K, NutMEG predicts exponential drops in final biomass ([Formula: see text]) and total methane production ([Formula: see text]) despite an increase in peak growth rates ([Formula: see text]) for a typical methanogen in ideal conditions. This is caused by the increasing cost of microbial maintenance diverting energy away from growth processes. Restricting energy and nutrients exacerbates this trend. With minimal assumptions NutMEG can reliably replicate microbial growth behaviour, but better understanding of the synthesis and maintenance costs life must overcome in different extremes is required to improve its results further. NutMEG can help us assess the theoretical habitability of extraterrestrial environments and predict potential biomass and biosignature production, for example on exoplanets using minimum input parameters to guide observations.

Entities:  

Keywords:  energy limitation; habitability; methanogens; microbial maintenance; modelling; nutrient limitation

Mesh:

Year:  2020        PMID: 33081642      PMCID: PMC7653372          DOI: 10.1098/rsif.2020.0588

Source DB:  PubMed          Journal:  J R Soc Interface        ISSN: 1742-5662            Impact factor:   4.118


  40 in total

Review 1.  Growing E. coli to high cell density--a historical perspective on method development.

Authors:  Joseph Shiloach; Rephael Fass
Journal:  Biotechnol Adv       Date:  2005-07       Impact factor: 14.227

2.  Quantitative habitability.

Authors:  Everett L Shock; Melanie E Holland
Journal:  Astrobiology       Date:  2007-12       Impact factor: 4.335

Review 3.  Life in the lithosphere, kinetics and the prospects for life elsewhere.

Authors:  Charles S Cockell
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2011-02-13       Impact factor: 4.226

4.  Toward a List of Molecules as Potential Biosignature Gases for the Search for Life on Exoplanets and Applications to Terrestrial Biochemistry.

Authors:  S Seager; W Bains; J J Petkowski
Journal:  Astrobiology       Date:  2016-04-20       Impact factor: 4.335

5.  Unification of Protein Abundance Datasets Yields a Quantitative Saccharomyces cerevisiae Proteome.

Authors:  Brandon Ho; Anastasia Baryshnikova; Grant W Brown
Journal:  Cell Syst       Date:  2018-01-17       Impact factor: 10.304

Review 6.  Alkaliphiles: 'basic' molecular problems of pH tolerance and bioenergetics.

Authors:  T A Krulwich
Journal:  Mol Microbiol       Date:  1995-02       Impact factor: 3.501

7.  In search of a thermodynamic description of biomass yields for the chemotrophic growth of microorganisms.

Authors:  J J Heijnen; J P Van Dijken
Journal:  Biotechnol Bioeng       Date:  1992-04-05       Impact factor: 4.530

8.  Drivers of Bacterial Maintenance and Minimal Energy Requirements.

Authors:  Christopher P Kempes; Peter M van Bodegom; David Wolpert; Eric Libby; Jan Amend; Tori Hoehler
Journal:  Front Microbiol       Date:  2017-01-31       Impact factor: 5.640

9.  Protein abundance profiling of the Escherichia coli cytosol.

Authors:  Yasushi Ishihama; Thorsten Schmidt; Juri Rappsilber; Matthias Mann; F Ulrich Hartl; Michael J Kerner; Dmitrij Frishman
Journal:  BMC Genomics       Date:  2008-02-27       Impact factor: 3.969

10.  Bioenergetic Controls on Microbial Ecophysiology in Marine Sediments.

Authors:  James A Bradley; Jan P Amend; Douglas E LaRowe
Journal:  Front Microbiol       Date:  2018-02-13       Impact factor: 5.640

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