Literature DB >> 26858466

A continuous linear optimal transport approach for pattern analysis in image datasets.

Soheil Kolouri1, Akif B Tosun1, John A Ozolek2, Gustavo K Rohde3.   

Abstract

We present a new approach to facilitate the application of the optimal transport metric to pattern recognition on image databases. The method is based on a linearized version of the optimal transport metric, which provides a linear embedding for the images. Hence, it enables shape and appearance modeling using linear geometric analysis techniques in the embedded space. In contrast to previous work, we use Monge's formulation of the optimal transport problem, which allows for reasonably fast computation of the linearized optimal transport embedding for large images. We demonstrate the application of the method to recover and visualize meaningful variations in a supervised-learning setting on several image datasets, including chromatin distribution in the nuclei of cells, galaxy morphologies, facial expressions, and bird species identification. We show that the new approach allows for high-resolution construction of modes of variations and discrimination and can enhance classification accuracy in a variety of image discrimination problems.

Entities:  

Keywords:  Generative image modeling; Linear embedding; Optimal transport; Pattern visualization

Year:  2016        PMID: 26858466      PMCID: PMC4742369          DOI: 10.1016/j.patcog.2015.09.019

Source DB:  PubMed          Journal:  Pattern Recognit        ISSN: 0031-3203            Impact factor:   7.740


  19 in total

1.  A global geometric framework for nonlinear dimensionality reduction.

Authors:  J B Tenenbaum; V de Silva; J C Langford
Journal:  Science       Date:  2000-12-22       Impact factor: 47.728

2.  AN EFFICIENT NUMERICAL METHOD FOR THE SOLUTION OF THE L(2) OPTIMAL MASS TRANSFER PROBLEM.

Authors:  Eldad Haber; Tauseef Rehman; Allen Tannenbaum
Journal:  SIAM J Sci Comput       Date:  2010       Impact factor: 2.373

3.  Analysis of planar shapes using geodesic paths on shape spaces.

Authors:  Eric Klassen; Anuj Srivastava; Washington Mio; Shantanu H Joshi
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2004-03       Impact factor: 6.226

4.  Algorithms to automatically quantify the geometric similarity of anatomical surfaces.

Authors:  Doug M Boyer; Yaron Lipman; Elizabeth St Clair; Jesus Puente; Biren A Patel; Thomas Funkhouser; Jukka Jernvall; Ingrid Daubechies
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-24       Impact factor: 11.205

5.  Automated segmentation, classification, and tracking of cancer cell nuclei in time-lapse microscopy.

Authors:  Xiaowei Chen; Xiaobo Zhou; Stephen T C Wong
Journal:  IEEE Trans Biomed Eng       Date:  2006-04       Impact factor: 4.538

6.  Wavelet-based texture retrieval using generalized Gaussian density and Kullback-Leibler distance.

Authors:  Minh N Do; Martin Vetterli
Journal:  IEEE Trans Image Process       Date:  2002       Impact factor: 10.856

7.  Detection of malignant mesothelioma using nuclear structure of mesothelial cells in effusion cytology specimens.

Authors:  Akif Burak Tosun; Oleksandr Yergiyev; Soheil Kolouri; Jan F Silverman; Gustavo K Rohde
Journal:  Cytometry A       Date:  2015-01-16       Impact factor: 4.355

8.  Automatic morphological classification of galaxy images.

Authors:  Lior Shamir
Journal:  Mon Not R Astron Soc       Date:  2009-11-01       Impact factor: 5.287

9.  A linear optimal transportation framework for quantifying and visualizing variations in sets of images.

Authors:  Wei Wang; Dejan Slepčev; Saurav Basu; John A Ozolek; Gustavo K Rohde
Journal:  Int J Comput Vis       Date:  2013-01-01       Impact factor: 7.410

10.  Accurate diagnosis of thyroid follicular lesions from nuclear morphology using supervised learning.

Authors:  John A Ozolek; Akif Burak Tosun; Wei Wang; Cheng Chen; Soheil Kolouri; Saurav Basu; Hu Huang; Gustavo K Rohde
Journal:  Med Image Anal       Date:  2014-04-21       Impact factor: 8.545

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  10 in total

1.  The Radon Cumulative Distribution Transform and Its Application to Image Classification.

Authors:  Soheil Kolouri; Se Rim Park; Gustavo K Rohde
Journal:  IEEE Trans Image Process       Date:  2015-12-17       Impact factor: 10.856

2.  A Transportation Lp Distance for Signal Analysis.

Authors:  Matthew Thorpe; Serim Park; Soheil Kolouri; Gustavo K Rohde; Dejan Slepčev
Journal:  J Math Imaging Vis       Date:  2017-03-23       Impact factor: 1.627

3.  Assessing Postconcussive Reaction Time Using Transport-Based Morphometry of Diffusion Tensor Images.

Authors:  S Kundu; A Ghodadra; S Fakhran; L M Alhilali; G K Rohde
Journal:  AJNR Am J Neuroradiol       Date:  2019-06-13       Impact factor: 3.825

4.  PARTITIONING SIGNAL CLASSES USING TRANSPORT TRANSFORMS FOR DATA ANALYSIS AND MACHINE LEARNING.

Authors:  Akram Aldroubi; Shiying Li; Gustavo K Rohde
Journal:  Sampl Theory Signal Process Data Anal       Date:  2021-05-11

5.  Enabling early detection of osteoarthritis from presymptomatic cartilage texture maps via transport-based learning.

Authors:  Shinjini Kundu; Beth G Ashinsky; Mustapha Bouhrara; Erik B Dam; Shadpour Demehri; Mohammad Shifat-E-Rabbi; Richard G Spencer; Kenneth L Urish; Gustavo K Rohde
Journal:  Proc Natl Acad Sci U S A       Date:  2020-09-21       Impact factor: 11.205

6.  Discovery and visualization of structural biomarkers from MRI using transport-based morphometry.

Authors:  Shinjini Kundu; Soheil Kolouri; Kirk I Erickson; Arthur F Kramer; Edward McAuley; Gustavo K Rohde
Journal:  Neuroimage       Date:  2017-11-05       Impact factor: 6.556

7.  Optimal Mass Transport: Signal processing and machine-learning applications.

Authors:  Soheil Kolouri; Serim Park; Matthew Thorpe; Dejan Slepčev; Gustavo K Rohde
Journal:  IEEE Signal Process Mag       Date:  2017-07-11       Impact factor: 12.551

8.  Image-derived models of cell organization changes during differentiation and drug treatments.

Authors:  Xiongtao Ruan; Gregory R Johnson; Iris Bierschenk; Roland Nitschke; Melanie Boerries; Hauke Busch; Robert F Murphy
Journal:  Mol Biol Cell       Date:  2019-11-27       Impact factor: 4.138

9.  Investigating impact of cardiorespiratory fitness in reducing brain tissue loss caused by ageing.

Authors:  Shinjini Kundu; Haiqing Huang; Kirk I Erickson; Edward McAuley; Arthur F Kramer; Gustavo K Rohde
Journal:  Brain Commun       Date:  2021-11-18

10.  Predictive Nuclear Chromatin Characteristics of Melanoma and Dysplastic Nevi.

Authors:  Matthew G Hanna; Chi Liu; Gustavo K Rohde; Rajendra Singh
Journal:  J Pathol Inform       Date:  2017-04-10
  10 in total

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