Literature DB >> 16602586

Automated segmentation, classification, and tracking of cancer cell nuclei in time-lapse microscopy.

Xiaowei Chen1, Xiaobo Zhou, Stephen T C Wong.   

Abstract

Quantitative measurement of cell cycle progression in individual cells over time is important in understanding drug treatment effects on cancer cells. Recent advances in time-lapse fluorescence microscopy imaging have provided an important tool to study the cell cycle process under different conditions of perturbation. However, existing computational imaging methods are rather limited in analyzing and tracking such time-lapse datasets, and manual analysis is unreasonably time-consuming and subject to observer variances. This paper presents an automated system that integrates a series of advanced analysis methods to fill this gap. The cellular image analysis methods can be used to segment, classify, and track individual cells in a living cell population over a few days. Experimental results show that the proposed method is efficient and effective in cell tracking and phase identification.

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Mesh:

Year:  2006        PMID: 16602586     DOI: 10.1109/TBME.2006.870201

Source DB:  PubMed          Journal:  IEEE Trans Biomed Eng        ISSN: 0018-9294            Impact factor:   4.538


  69 in total

1.  A framework for image-based classification of mitotic cells in asynchronous populations.

Authors:  Scott D Slattery; Justin Y Newberg; Adam T Szafran; Rebecca M Hall; Bill R Brinkley; Michael A Mancini
Journal:  Assay Drug Dev Technol       Date:  2011-11-15       Impact factor: 1.738

2.  CellCognition: time-resolved phenotype annotation in high-throughput live cell imaging.

Authors:  Michael Held; Michael H A Schmitz; Bernd Fischer; Thomas Walter; Beate Neumann; Michael H Olma; Matthias Peter; Jan Ellenberg; Daniel W Gerlich
Journal:  Nat Methods       Date:  2010-08-08       Impact factor: 28.547

3.  An automated method for cell detection in zebrafish.

Authors:  Tianming Liu; Gang Li; Jingxin Nie; Ashley Tarokh; Xiaobo Zhou; Lei Guo; Jarema Malicki; Weiming Xia; Stephen T C Wong
Journal:  Neuroinformatics       Date:  2008-02-21

Review 4.  Multi-parameter phenotypic profiling: using cellular effects to characterize small-molecule compounds.

Authors:  Yan Feng; Timothy J Mitchison; Andreas Bender; Daniel W Young; John A Tallarico
Journal:  Nat Rev Drug Discov       Date:  2009-07       Impact factor: 84.694

5.  Segmentation of Brain Immunohistochemistry Images Using Clustering of Linear Centroids and Regional Shapes.

Authors:  Hai-Shan Wu; Jacinta Murray; Susan Morgello
Journal:  J Imaging Sci Technol       Date:  2008       Impact factor: 0.400

6.  Using machine learning to speed up manual image annotation: application to a 3D imaging protocol for measuring single cell gene expression in the developing C. elegans embryo.

Authors:  Zafer Aydin; John I Murray; Robert H Waterston; William S Noble
Journal:  BMC Bioinformatics       Date:  2010-02-11       Impact factor: 3.169

Review 7.  Breast cancer cell nuclei classification in histopathology images using deep neural networks.

Authors:  Yangqin Feng; Lei Zhang; Zhang Yi
Journal:  Int J Comput Assist Radiol Surg       Date:  2017-08-31       Impact factor: 2.924

Review 8.  Microscopic cell nuclei segmentation based on adaptive attention window.

Authors:  ByoungChul Ko; MiSuk Seo; Jae-Yeal Nam
Journal:  J Digit Imaging       Date:  2008-06-17       Impact factor: 4.056

9.  Significantly improved precision of cell migration analysis in time-lapse video microscopy through use of a fully automated tracking system.

Authors:  Johannes Huth; Malte Buchholz; Johann M Kraus; Martin Schmucker; Götz von Wichert; Denis Krndija; Thomas Seufferlein; Thomas M Gress; Hans A Kestler
Journal:  BMC Cell Biol       Date:  2010-04-08       Impact factor: 4.241

10.  A probabilistic cell model in background corrected image sequences for single cell analysis.

Authors:  Nezamoddin N Kachouie; Paul Fieguth; Eric Jervis
Journal:  Biomed Eng Online       Date:  2010-10-06       Impact factor: 2.819

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