Literature DB >> 24082108

Graphene quantum point contact transistor for DNA sensing.

Anuj Girdhar1, Chaitanya Sathe, Klaus Schulten, Jean-Pierre Leburton.   

Abstract

By using the nonequilibrium Green's function technique, we show that the shape of the edge, the carrier concentration, and the position and size of a nanopore in graphene nanoribbons can strongly affect its electronic conductance as well as its sensitivity to external charges. This technique, combined with a self-consistent Poisson-Boltzmann formalism to account for ion charge screening in solution, is able to detect the rotational and positional conformation of a DNA strand inside the nanopore. In particular, we show that a graphene membrane with quantum point contact geometry exhibits greater electrical sensitivity than a uniform armchair geometry provided that the carrier concentration is tuned to enhance charge detection. We propose a membrane design that contains an electrical gate in a configuration similar to a field-effect transistor for a graphene-based DNA sensing device.

Entities:  

Keywords:  bio-molecule; simulation; solid-state membrane; transport

Mesh:

Substances:

Year:  2013        PMID: 24082108      PMCID: PMC3801026          DOI: 10.1073/pnas.1308885110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  28 in total

1.  Fabrication of solid-state nanopores with single-nanometre precision.

Authors:  A J Storm; J H Chen; X S Ling; H W Zandbergen; C Dekker
Journal:  Nat Mater       Date:  2003-08       Impact factor: 43.841

2.  Slowing down and stretching DNA with an electrically tunable nanopore in a p-n semiconductor membrane.

Authors:  Dmitriy V Melnikov; Jean-Pierre Leburton; Maria E Gracheva
Journal:  Nanotechnology       Date:  2012-05-31       Impact factor: 3.874

3.  Detection of nucleic acids with graphene nanopores: ab initio characterization of a novel sequencing device.

Authors:  Tammie Nelson; Bo Zhang; Oleg V Prezhdo
Journal:  Nano Lett       Date:  2010-09-08       Impact factor: 11.189

4.  Multilayered semiconductor membranes for nanopore ionic conductance modulation.

Authors:  Maria E Gracheva; Dmitriy V Melnikov; Jean-Pierre Leburton
Journal:  ACS Nano       Date:  2008-11-25       Impact factor: 15.881

5.  Tailoring the atomic structure of graphene nanoribbons by scanning tunnelling microscope lithography.

Authors:  Levente Tapasztó; Gergely Dobrik; Philippe Lambin; László P Biró
Journal:  Nat Nanotechnol       Date:  2008-06-08       Impact factor: 39.213

Review 6.  Solid-state nanopores.

Authors:  Cees Dekker
Journal:  Nat Nanotechnol       Date:  2007-03-04       Impact factor: 39.213

7.  Computational investigation of DNA detection using graphene nanopores.

Authors:  Chaitanya Sathe; Xueqing Zou; Jean-Pierre Leburton; Klaus Schulten
Journal:  ACS Nano       Date:  2011-10-13       Impact factor: 15.881

8.  Electrochemistry at the edge of a single graphene layer in a nanopore.

Authors:  Shouvik Banerjee; Jiwook Shim; Jose Rivera; Xiaozhong Jin; David Estrada; Vita Solovyeva; Xueqiu You; James Pak; Eric Pop; Narayana Aluru; Rashid Bashir
Journal:  ACS Nano       Date:  2012-12-28       Impact factor: 15.881

Review 9.  The potential and challenges of nanopore sequencing.

Authors:  Daniel Branton; David W Deamer; Andre Marziali; Hagan Bayley; Steven A Benner; Thomas Butler; Massimiliano Di Ventra; Slaven Garaj; Andrew Hibbs; Xiaohua Huang; Stevan B Jovanovich; Predrag S Krstic; Stuart Lindsay; Xinsheng Sean Ling; Carlos H Mastrangelo; Amit Meller; John S Oliver; Yuriy V Pershin; J Michael Ramsey; Robert Riehn; Gautam V Soni; Vincent Tabard-Cossa; Meni Wanunu; Matthew Wiggin; Jeffery A Schloss
Journal:  Nat Biotechnol       Date:  2008-10       Impact factor: 54.908

10.  Local electrical potential detection of DNA by nanowire-nanopore sensors.

Authors:  Ping Xie; Qihua Xiong; Ying Fang; Quan Qing; Charles M Lieber
Journal:  Nat Nanotechnol       Date:  2011-12-11       Impact factor: 39.213

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  19 in total

1.  Single-molecular diodes based on opioid derivatives.

Authors:  M R S Siqueira; S M Corrêa; R M Gester; J Del Nero; A M J C Neto
Journal:  J Mol Model       Date:  2015-11-27       Impact factor: 1.810

Review 2.  Decoding DNA, RNA and peptides with quantum tunnelling.

Authors:  Massimiliano Di Ventra; Masateru Taniguchi
Journal:  Nat Nanotechnol       Date:  2016-02       Impact factor: 39.213

3.  Material witness: Improving pore performance.

Authors:  Philip Ball
Journal:  Nat Mater       Date:  2013-11       Impact factor: 43.841

Review 4.  Challenges in DNA motion control and sequence readout using nanopore devices.

Authors:  Spencer Carson; Meni Wanunu
Journal:  Nanotechnology       Date:  2015-02-02       Impact factor: 3.874

5.  Colloquium: Ionic phenomena in nanoscale pores through 2D materials.

Authors:  Subin Sahu; Michael Zwolak
Journal:  Rev Mod Phys       Date:  2019       Impact factor: 54.494

6.  Gate-Modulated Graphene Quantum Point Contact Device for DNA Sensing.

Authors:  Anuj Girdhar; Chaitanya Sathe; Klaus Schulten; Jean-Pierre Leburton
Journal:  J Comput Electron       Date:  2014-12-01       Impact factor: 1.807

7.  Detection and Mapping of DNA Methylation with 2D Material Nanopores.

Authors:  Hu Qiu; Aditya Sarathy; Klaus Schulten; Jean-Pierre Leburton
Journal:  NPJ 2D Mater Appl       Date:  2017-04-11

8.  Tunable graphene quantum point contact transistor for DNA detection and characterization.

Authors:  Anuj Girdhar; Chaitanya Sathe; Klaus Schulten; Jean-Pierre Leburton
Journal:  Nanotechnology       Date:  2015-03-13       Impact factor: 3.874

9.  Tip-Based Nanofabrication of Arbitrary Shapes of Graphene Nanoribbons for Device Applications.

Authors:  Huan Hu; Shouvik Banerjee; David Estrada; Rashid Bashir; William P King
Journal:  RSC Adv       Date:  2015-04-15       Impact factor: 3.361

10.  Electrically Tunable Quenching of DNA Fluctuations in Biased Solid-State Nanopores.

Authors:  Hu Qiu; Anuj Girdhar; Klaus Schulten; Jean-Pierre Leburton
Journal:  ACS Nano       Date:  2016-03-30       Impact factor: 15.881

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