Literature DB >> 30328860

Single-molecule protein sensing in a nanopore: a tutorial.

Nitinun Varongchayakul1, Jiaxi Song, Amit Meller, Mark W Grinstaff.   

Abstract

Proteins are the structural elements and machinery of cells responsible for a functioning biological architecture and homeostasis. Advances in nanotechnology are catalyzing key breakthroughs in many areas, including the analysis and study of proteins at the single-molecule level. Nanopore sensing is at the forefront of this revolution. This tutorial review provides readers a guidebook and reference for detecting and characterizing proteins at the single-molecule level using nanopores. Specifically, the review describes the key materials, nanoscale features, and design requirements of nanopores. It also discusses general design requirements as well as details on the analysis of protein translocation. Finally, the article provides the background necessary to understand current research trends and to encourage the identification of new biomedical applications for protein sensing using nanopores.

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Year:  2018        PMID: 30328860      PMCID: PMC6309966          DOI: 10.1039/c8cs00106e

Source DB:  PubMed          Journal:  Chem Soc Rev        ISSN: 0306-0012            Impact factor:   54.564


  48 in total

1.  Ion-beam sculpting at nanometre length scales.

Authors:  J Li; D Stein; C McMullan; D Branton; M J Aziz; J A Golovchenko
Journal:  Nature       Date:  2001-07-12       Impact factor: 49.962

2.  Fabrication of solid-state nanopores with single-nanometre precision.

Authors:  A J Storm; J H Chen; X S Ling; H W Zandbergen; C Dekker
Journal:  Nat Mater       Date:  2003-08       Impact factor: 43.841

3.  Thermal unfolding of proteins probed at the single molecule level using nanopores.

Authors:  Linda Payet; Marlène Martinho; Manuela Pastoriza-Gallego; Jean-Michel Betton; Loïc Auvray; Juan Pelta; Jérôme Mathé
Journal:  Anal Chem       Date:  2012-04-18       Impact factor: 6.986

4.  Single-molecule observation of protein adsorption onto an inorganic surface.

Authors:  David J Niedzwiecki; John Grazul; Liviu Movileanu
Journal:  J Am Chem Soc       Date:  2010-08-11       Impact factor: 15.419

5.  Single-molecule analysis of DNA-protein complexes using nanopores.

Authors:  Breton Hornblower; Amy Coombs; Richard D Whitaker; Anatoly Kolomeisky; Stephen J Picone; Amit Meller; Mark Akeson
Journal:  Nat Methods       Date:  2007-03-04       Impact factor: 28.547

6.  DNA translocation governed by interactions with solid-state nanopores.

Authors:  Meni Wanunu; Jason Sutin; Ben McNally; Andrew Chow; Amit Meller
Journal:  Biophys J       Date:  2008-08-15       Impact factor: 4.033

7.  Electrostatic focusing of unlabelled DNA into nanoscale pores using a salt gradient.

Authors:  Meni Wanunu; Will Morrison; Yitzhak Rabin; Alexander Y Grosberg; Amit Meller
Journal:  Nat Nanotechnol       Date:  2009-12-20       Impact factor: 39.213

8.  Single-molecule protein unfolding in solid state nanopores.

Authors:  David S Talaga; Jiali Li
Journal:  J Am Chem Soc       Date:  2009-07-08       Impact factor: 15.419

9.  Controlling protein translocation through nanopores with bio-inspired fluid walls.

Authors:  Erik C Yusko; Jay M Johnson; Sheereen Majd; Panchika Prangkio; Ryan C Rollings; Jiali Li; Jerry Yang; Michael Mayer
Journal:  Nat Nanotechnol       Date:  2011-02-20       Impact factor: 39.213

10.  Graphene as a subnanometre trans-electrode membrane.

Authors:  S Garaj; W Hubbard; A Reina; J Kong; D Branton; J A Golovchenko
Journal:  Nature       Date:  2010-08-18       Impact factor: 49.962

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  31 in total

1.  Interactions of a Polypeptide with a Protein Nanopore Under Crowding Conditions.

Authors:  Motahareh Ghahari Larimi; Lauren Ashley Mayse; Liviu Movileanu
Journal:  ACS Nano       Date:  2019-04-03       Impact factor: 15.881

2.  Ensemble Sensing Using Single-Molecule DNA Copolymers.

Authors:  Sagun Jonchhe; Sangeetha Selvam; Deepak Karna; Shankar Mandal; Benjamin Wales-McGrath; Hanbin Mao
Journal:  Anal Chem       Date:  2020-09-08       Impact factor: 6.986

3.  How Nanopore Translocation Experiments Can Measure RNA Unfolding.

Authors:  Prasad Bandarkar; Huan Yang; Robert Y Henley; Meni Wanunu; Paul C Whitford
Journal:  Biophys J       Date:  2020-02-04       Impact factor: 4.033

4.  Single-Molecule Protein Detection in a Biofluid Using a Quantitative Nanopore Sensor.

Authors:  Avinash Kumar Thakur; Liviu Movileanu
Journal:  ACS Sens       Date:  2019-08-21       Impact factor: 7.711

Review 5.  Localized Nanopore Fabrication via Controlled Breakdown.

Authors:  Cuifeng Ying; Tianji Ma; Lei Xu; Mohsen Rahmani
Journal:  Nanomaterials (Basel)       Date:  2022-07-12       Impact factor: 5.719

Review 6.  Strategies for Development of a Next-Generation Protein Sequencing Platform.

Authors:  Nicholas Callahan; Jennifer Tullman; Zvi Kelman; John Marino
Journal:  Trends Biochem Sci       Date:  2019-10-30       Impact factor: 13.807

7.  Assessment of 1/f noise associated with nanopores fabricated through chemically tuned controlled dielectric breakdown.

Authors:  Jugal Saharia; Y M Nuwan D Y Bandara; Buddini I Karawdeniya; George Alexandrakis; Min Jun Kim
Journal:  Electrophoresis       Date:  2021-01-06       Impact factor: 3.535

8.  Design, assembly, and characterization of membrane-spanning DNA nanopores.

Authors:  Conor Lanphere; Daniel Offenbartl-Stiegert; Adam Dorey; Genevieve Pugh; Elena Georgiou; Yongzheng Xing; Jonathan R Burns; Stefan Howorka
Journal:  Nat Protoc       Date:  2020-12-21       Impact factor: 13.491

Review 9.  Recent advances in integrated solid-state nanopore sensors.

Authors:  Mahmudur Rahman; Mohammad Julker Neyen Sampad; Aaron Hawkins; Holger Schmidt
Journal:  Lab Chip       Date:  2021-06-17       Impact factor: 7.517

10.  Detection of single peptide with only one amino acid modification via electronic fingerprinting using reengineered durable channel of Phi29 DNA packaging motor.

Authors:  Long Zhang; Miranda L Gardner; Lakmal Jayasinghe; Michael Jordan; Julian Aldana; Nicolas Burns; Michael A Freitas; Peixuan Guo
Journal:  Biomaterials       Date:  2021-07-10       Impact factor: 15.304

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