Literature DB >> 26774823

Evolving New Skeletal Traits by cis-Regulatory Changes in Bone Morphogenetic Proteins.

Vahan B Indjeian1, Garrett A Kingman2, Felicity C Jones2, Catherine A Guenther1, Jane Grimwood3, Jeremy Schmutz3, Richard M Myers3, David M Kingsley4.   

Abstract

Changes in bone size and shape are defining features of many vertebrates. Here we use genetic crosses and comparative genomics to identify specific regulatory DNA alterations controlling skeletal evolution. Armor bone-size differences in sticklebacks map to a major effect locus overlapping BMP family member GDF6. Freshwater fish express more GDF6 due in part to a transposon insertion, and transgenic overexpression of GDF6 phenocopies evolutionary changes in armor-plate size. The human GDF6 locus also has undergone distinctive regulatory evolution, including complete loss of an enhancer that is otherwise highly conserved between chimps and other mammals. Functional tests show that the ancestral enhancer drives expression in hindlimbs but not forelimbs, in locations that have been specifically modified during the human transition to bipedalism. Both gain and loss of regulatory elements can localize BMP changes to specific anatomical locations, providing a flexible regulatory basis for evolving species-specific changes in skeletal form.
Copyright © 2016 Elsevier Inc. All rights reserved.

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Year:  2016        PMID: 26774823      PMCID: PMC4759241          DOI: 10.1016/j.cell.2015.12.007

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  44 in total

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Authors:  Craig T Miller; Andrew M Glazer; Brian R Summers; Benjamin K Blackman; Andrew R Norman; Michael D Shapiro; Bonnie L Cole; Catherine L Peichel; Dolph Schluter; David M Kingsley
Journal:  Genetics       Date:  2014-03-19       Impact factor: 4.562

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Review 3.  Selection and adaptation in the human genome.

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4.  Genetic and neural modularity underlie the evolution of schooling behavior in threespine sticklebacks.

Authors:  Anna K Greenwood; Abigail R Wark; Kohta Yoshida; Catherine L Peichel
Journal:  Curr Biol       Date:  2013-09-12       Impact factor: 10.834

5.  Genetic architecture of variation in the lateral line sensory system of threespine sticklebacks.

Authors:  Abigail R Wark; Margaret G Mills; Lam-Ha Dang; Yingguang Frank Chan; Felicity C Jones; Shannon D Brady; Devin M Absher; Jane Grimwood; Jeremy Schmutz; Richard M Myers; David M Kingsley; Catherine L Peichel
Journal:  G3 (Bethesda)       Date:  2012-09-01       Impact factor: 3.154

6.  The BMP ligand Gdf6 prevents differentiation of coronal suture mesenchyme in early cranial development.

Authors:  Dawn E Clendenning; Douglas P Mortlock
Journal:  PLoS One       Date:  2012-05-31       Impact factor: 3.240

7.  Genomic analysis of a key innovation in an experimental Escherichia coli population.

Authors:  Zachary D Blount; Jeffrey E Barrick; Carla J Davidson; Richard E Lenski
Journal:  Nature       Date:  2012-09-19       Impact factor: 49.962

8.  Human-specific loss of regulatory DNA and the evolution of human-specific traits.

Authors:  Cory Y McLean; Philip L Reno; Alex A Pollen; Abraham I Bassan; Terence D Capellini; Catherine Guenther; Vahan B Indjeian; Xinhong Lim; Douglas B Menke; Bruce T Schaar; Aaron M Wenger; Gill Bejerano; David M Kingsley
Journal:  Nature       Date:  2011-03-10       Impact factor: 49.962

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10.  The genomic basis of adaptive evolution in threespine sticklebacks.

Authors:  Felicity C Jones; Manfred G Grabherr; Yingguang Frank Chan; Pamela Russell; Evan Mauceli; Jeremy Johnson; Ross Swofford; Mono Pirun; Michael C Zody; Simon White; Ewan Birney; Stephen Searle; Jeremy Schmutz; Jane Grimwood; Mark C Dickson; Richard M Myers; Craig T Miller; Brian R Summers; Anne K Knecht; Shannon D Brady; Haili Zhang; Alex A Pollen; Timothy Howes; Chris Amemiya; Jen Baldwin; Toby Bloom; David B Jaffe; Robert Nicol; Jane Wilkinson; Eric S Lander; Federica Di Palma; Kerstin Lindblad-Toh; David M Kingsley
Journal:  Nature       Date:  2012-04-04       Impact factor: 49.962

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Authors:  Guney Bademci; Clemer Abad; Filiz B Cengiz; Serhat Seyhan; Armagan Incesulu; Shengru Guo; Suat Fitoz; Emine Ikbal Atli; Nicholas C Gosstola; Selma Demir; Brett M Colbert; Gozde Cosar Seyhan; Claire J Sineni; Duygu Duman; Hakan Gurkan; Cynthia C Morton; Derek M Dykxhoorn; Katherina Walz; Mustafa Tekin
Journal:  J Clin Invest       Date:  2020-08-03       Impact factor: 14.808

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Journal:  Am J Physiol Endocrinol Metab       Date:  2016-07-12       Impact factor: 4.310

Review 3.  Discovery of mutations for Mendelian disorders.

Authors:  Fowzan S Alkuraya
Journal:  Hum Genet       Date:  2016-04-11       Impact factor: 4.132

4.  The Genetic Control of Stoichiometry Underlying Autism.

Authors:  Robert B Darnell
Journal:  Annu Rev Neurosci       Date:  2020-07-08       Impact factor: 12.449

Review 5.  The rewiring of transcription circuits in evolution.

Authors:  Alexander D Johnson
Journal:  Curr Opin Genet Dev       Date:  2017-11-08       Impact factor: 5.578

6.  Genetic Dissection of a Supergene Implicates Tfap2a in Craniofacial Evolution of Threespine Sticklebacks.

Authors:  Priscilla A Erickson; Jiyeon Baek; James C Hart; Phillip A Cleves; Craig T Miller
Journal:  Genetics       Date:  2018-03-28       Impact factor: 4.562

Review 7.  Enhancer evolution and the origins of morphological novelty.

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Journal:  Curr Opin Genet Dev       Date:  2017-05-18       Impact factor: 5.578

8.  Progressive Loss of Function in a Limb Enhancer during Snake Evolution.

Authors:  Evgeny Z Kvon; Olga K Kamneva; Uirá S Melo; Iros Barozzi; Marco Osterwalder; Brandon J Mannion; Virginie Tissières; Catherine S Pickle; Ingrid Plajzer-Frick; Elizabeth A Lee; Momoe Kato; Tyler H Garvin; Jennifer A Akiyama; Veena Afzal; Javier Lopez-Rios; Edward M Rubin; Diane E Dickel; Len A Pennacchio; Axel Visel
Journal:  Cell       Date:  2016-10-20       Impact factor: 41.582

9.  Evolutionary Loss of Genomic Proximity to Conserved Noncoding Elements Impacted the Gene Expression Dynamics During Mammalian Brain Development.

Authors:  Meenakshi Bagadia; Keerthivasan Raanin Chandradoss; Yachna Jain; Harpreet Singh; Mohan Lal; Kuljeet Singh Sandhu
Journal:  Genetics       Date:  2019-02-22       Impact factor: 4.562

10.  Whole-genome resequencing reveals candidate mutations for pig prolificacy.

Authors:  Wen-Ting Li; Meng-Meng Zhang; Qi-Gang Li; Hui Tang; Li-Fan Zhang; Ke-Jun Wang; Mu-Zhen Zhu; Yun-Feng Lu; Hai-Gang Bao; Yuan-Ming Zhang; Qiu-Yan Li; Ke-Liang Wu; Chang-Xin Wu
Journal:  Proc Biol Sci       Date:  2017-12-20       Impact factor: 5.349

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