Literature DB >> 28527813

Enhancer evolution and the origins of morphological novelty.

Mark Rebeiz1, Miltos Tsiantis2.   

Abstract

A central goal of evolutionary biology is to understand the genetic origin of morphological novelties-i.e. anatomical structures unique to a taxonomic group. Elaboration of morphology during development depends on networks of regulatory genes that activate patterned gene expression through transcriptional enhancer regions. We summarize recent case studies and genome-wide investigations that have uncovered diverse mechanisms though which new enhancers arise. We also discuss how these enhancer-originating mechanisms have clarified the history of genetic networks underlying diversification of genital structures in flies, limbs and neural crest in chordates, and plant leaves. These studies have identified enhancers that were pivotal for morphological divergence and highlighted how novel genetic networks shaping form emerged from pre-existing ones.
Copyright © 2017 Elsevier Ltd. All rights reserved.

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Year:  2017        PMID: 28527813      PMCID: PMC5623808          DOI: 10.1016/j.gde.2017.04.006

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  62 in total

1.  Neural crest and the origin of vertebrates: a new head.

Authors:  C Gans; R G Northcutt
Journal:  Science       Date:  1983-04-15       Impact factor: 47.728

2.  Gene regulation for higher cells: a theory.

Authors:  R J Britten; E H Davidson
Journal:  Science       Date:  1969-07-25       Impact factor: 47.728

3.  Chance caught on the wing: cis-regulatory evolution and the origin of pigment patterns in Drosophila.

Authors:  Nicolas Gompel; Benjamin Prud'homme; Patricia J Wittkopp; Victoria A Kassner; Sean B Carroll
Journal:  Nature       Date:  2005-02-03       Impact factor: 49.962

4.  Hox gene expression in teleost fins and the origin of vertebrate digits.

Authors:  P Sordino; F van der Hoeven; D Duboule
Journal:  Nature       Date:  1995-06-22       Impact factor: 49.962

5.  Co-option of an Ancestral Hox-Regulated Network Underlies a Recently Evolved Morphological Novelty.

Authors:  William J Glassford; Winslow C Johnson; Natalie R Dall; Sarah Jacquelyn Smith; Yang Liu; Werner Boll; Markus Noll; Mark Rebeiz
Journal:  Dev Cell       Date:  2015-09-03       Impact factor: 12.270

6.  Generation of diverse biological forms through combinatorial interactions between tissue polarity and growth.

Authors:  Richard Kennaway; Enrico Coen; Amelia Green; Andrew Bangham
Journal:  PLoS Comput Biol       Date:  2011-06-16       Impact factor: 4.475

7.  Morphological evolution caused by many subtle-effect substitutions in regulatory DNA.

Authors:  Nicolás Frankel; Deniz F Erezyilmaz; Alistair P McGregor; Shu Wang; François Payre; David L Stern
Journal:  Nature       Date:  2011-06-29       Impact factor: 49.962

8.  Ancient transposable elements transformed the uterine regulatory landscape and transcriptome during the evolution of mammalian pregnancy.

Authors:  Vincent J Lynch; Mauris C Nnamani; Aurélie Kapusta; Kathryn Brayer; Silvia L Plaza; Erik C Mazur; Deena Emera; Shehzad Z Sheikh; Frank Grützner; Stefan Bauersachs; Alexander Graf; Steven L Young; Jason D Lieb; Francesco J DeMayo; Cédric Feschotte; Günter P Wagner
Journal:  Cell Rep       Date:  2015-01-29       Impact factor: 9.423

Review 9.  Exaptation of transposable elements into novel cis-regulatory elements: is the evidence always strong?

Authors:  Flávio S J de Souza; Lucía F Franchini; Marcelo Rubinstein
Journal:  Mol Biol Evol       Date:  2013-03-13       Impact factor: 16.240

10.  Alternate wiring of a KNOXI genetic network underlies differences in leaf development of A. thaliana and C. hirsuta.

Authors:  Madlen I Rast-Somssich; Suvi Broholm; Huw Jenkins; Claudia Canales; Daniela Vlad; Michiel Kwantes; Gemma Bilsborough; Raffaele Dello Ioio; Rob M Ewing; Patrick Laufs; Peter Huijser; Carolyn Ohno; Marcus G Heisler; Angela Hay; Miltos Tsiantis
Journal:  Genes Dev       Date:  2015-11-15       Impact factor: 11.361

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  24 in total

Review 1.  Active turnover of DNA methylation during cell fate decisions.

Authors:  Aled Parry; Steffen Rulands; Wolf Reik
Journal:  Nat Rev Genet       Date:  2020-10-06       Impact factor: 53.242

2.  Redundant and Cryptic Enhancer Activities of the Drosophila yellow Gene.

Authors:  Gizem Kalay; Jennifer Lachowiec; Ulises Rosas; Mackenzie R Dome; Patricia Wittkopp
Journal:  Genetics       Date:  2019-03-06       Impact factor: 4.562

3.  Disparate expression specificities coded by a shared Hox-C enhancer.

Authors:  Steve W Miller; James W Posakony
Journal:  Elife       Date:  2020-04-28       Impact factor: 8.140

4.  Quantitative Comparison of the Anterior-Posterior Patterning System in the Embryos of Five Drosophila Species.

Authors:  Zeba Wunderlich; Charless C Fowlkes; Kelly B Eckenrode; Meghan D J Bragdon; Arash Abiri; Angela H DePace
Journal:  G3 (Bethesda)       Date:  2019-07-09       Impact factor: 3.154

5.  Augmentation of a wound response element accompanies the origin of a Hox-regulated Drosophila abdominal pigmentation trait.

Authors:  Sumant Grover; Melissa E Williams; Rebecca Kaiser; Jesse T Hughes; Lauren Gresham; Mark Rebeiz; Thomas M Williams
Journal:  Dev Biol       Date:  2018-07-04       Impact factor: 3.582

6.  Architecture and evolution of the cis-regulatory system of the echinoderm kirrelL gene.

Authors:  Jian Ming Khor; Charles A Ettensohn
Journal:  Elife       Date:  2022-02-25       Impact factor: 8.140

7.  Species-specific sensitivity to TGFβ signaling and changes to the Mmp13 promoter underlie avian jaw development and evolution.

Authors:  Spenser S Smith; Daniel Chu; Tiange Qu; Jessye A Aggleton; Richard A Schneider
Journal:  Elife       Date:  2022-06-06       Impact factor: 8.713

8.  Conservation of peripheral nervous system formation mechanisms in divergent ascidian embryos.

Authors:  Joshua F Coulcher; Agnès Roure; Rafath Chowdhury; Méryl Robert; Laury Lescat; Aurélie Bouin; Juliana Carvajal Cadavid; Hiroki Nishida; Sébastien Darras
Journal:  Elife       Date:  2020-11-16       Impact factor: 8.140

9.  Evolutionary divergence of a Hoxa2b hindbrain enhancer in syngnathids mimics results of functional assays.

Authors:  Allison M Fuiten; William A Cresko
Journal:  Dev Genes Evol       Date:  2021-05-18       Impact factor: 0.900

10.  Developmental hourglass and heterochronic shifts in fin and limb development.

Authors:  Koh Onimaru; Kaori Tatsumi; Chiharu Tanegashima; Mitsutaka Kadota; Osamu Nishimura; Shigehiro Kuraku
Journal:  Elife       Date:  2021-02-09       Impact factor: 8.140

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