Literature DB >> 26661504

Solution-State (17)O Quadrupole Central-Transition NMR Spectroscopy in the Active Site of Tryptophan Synthase.

Robert P Young1, Bethany G Caulkins1, Dan Borchardt1, Daryl N Bulloch1, Cynthia K Larive1, Michael F Dunn2, Leonard J Mueller3.   

Abstract

Oxygen is an essential participant in the acid-base chemistry that takes place within many enzyme active sites, yet has remained virtually silent as a probe in NMR spectroscopy. Here, we demonstrate the first use of solution-state (17)O quadrupole central-transition NMR spectroscopy to characterize enzymatic intermediates under conditions of active catalysis. In the 143 kDa pyridoxal-5'-phosphate-dependent enzyme tryptophan synthase, reactions of the α-aminoacrylate intermediate with the nucleophiles indoline and 2-aminophenol correlate with an upfield shift of the substrate carboxylate oxygen resonances. First principles calculations suggest that the increased shieldings for these quinonoid intermediates result from the net increase in the charge density of the substrate-cofactor π-bonding network, particularly at the adjacent α-carbon site.
© 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  NMR spectroscopy; enzymes; homogeneous catalysis; ligases; proteins

Mesh:

Substances:

Year:  2015        PMID: 26661504      PMCID: PMC4752203          DOI: 10.1002/anie.201508898

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  15 in total

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2.  X-ray and NMR crystallography in an enzyme active site: the indoline quinonoid intermediate in tryptophan synthase.

Authors:  Jinfeng Lai; Dimitri Niks; Yachong Wang; Tatiana Domratcheva; Thomas R M Barends; Friedrich Schwarz; Ryan A Olsen; Douglas W Elliott; M Qaiser Fatmi; Chia-en A Chang; Ilme Schlichting; Michael F Dunn; Leonard J Mueller
Journal:  J Am Chem Soc       Date:  2010-12-10       Impact factor: 15.419

3.  Quadrupole central transition 17O NMR spectroscopy of biological macromolecules in aqueous solution.

Authors:  Jianfeng Zhu; Gang Wu
Journal:  J Am Chem Soc       Date:  2010-12-22       Impact factor: 15.419

4.  Allostery and substrate channeling in the tryptophan synthase bienzyme complex: evidence for two subunit conformations and four quaternary states.

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Journal:  Biochemistry       Date:  2013-09-06       Impact factor: 3.162

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Authors:  Joshua D Hartman; Thomas J Neubauer; Bethany G Caulkins; Leonard J Mueller; Gregory J O Beran
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Review 6.  Controlling reaction specificity in pyridoxal phosphate enzymes.

Authors:  Michael D Toney
Journal:  Biochim Biophys Acta       Date:  2011-06-06

7.  Stereoelectronic control of bond formation in Escherichia coli tryptophan synthase: substrate specificity and enzymatic synthesis of the novel amino acid dihydroisotryptophan.

Authors:  M Roy; S Keblawi; M F Dunn
Journal:  Biochemistry       Date:  1988-09-06       Impact factor: 3.162

8.  NMR studies of the stability, protonation States, and tautomerism of (13)C- AND (15)N-labeled aldimines of the coenzyme pyridoxal 5'-phosphate in water.

Authors:  Monique Chan-Huot; Shasad Sharif; Peter M Tolstoy; Michael D Toney; Hans-Heinrich Limbach
Journal:  Biochemistry       Date:  2010-12-06       Impact factor: 3.162

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10.  Protonation states of the tryptophan synthase internal aldimine active site from solid-state NMR spectroscopy: direct observation of the protonated Schiff base linkage to pyridoxal-5'-phosphate.

Authors:  Bethany G Caulkins; Baback Bastin; Chen Yang; Thomas J Neubauer; Robert P Young; Eduardo Hilario; Yu-ming M Huang; Chia-en A Chang; Li Fan; Michael F Dunn; Michael J Marsella; Leonard J Mueller
Journal:  J Am Chem Soc       Date:  2014-09-03       Impact factor: 15.419

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  11 in total

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Review 4.  NMR of Macromolecular Assemblies and Machines at 1 GHz and Beyond: New Transformative Opportunities for Molecular Structural Biology.

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Review 5.  Advances in instrumentation and methodology for solid-state NMR of biological assemblies.

Authors:  Rachel W Martin; John E Kelly; Jessica I Kelz
Journal:  J Struct Biol       Date:  2018-09-08       Impact factor: 2.867

6.  NMR Crystallography of a Carbanionic Intermediate in Tryptophan Synthase: Chemical Structure, Tautomerization, and Reaction Specificity.

Authors:  Bethany G Caulkins; Robert P Young; Ryan A Kudla; Chen Yang; Thomas J Bittbauer; Baback Bastin; Eduardo Hilario; Li Fan; Michael J Marsella; Michael F Dunn; Leonard J Mueller
Journal:  J Am Chem Soc       Date:  2016-11-11       Impact factor: 15.419

7.  Imaging active site chemistry and protonation states: NMR crystallography of the tryptophan synthase α-aminoacrylate intermediate.

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10.  Engineering Improves Enzymatic Synthesis of L-Tryptophan by Tryptophan Synthase from Escherichia coli.

Authors:  Lisheng Xu; Fangkai Han; Zeng Dong; Zhaojun Wei
Journal:  Microorganisms       Date:  2020-04-05
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