Literature DB >> 21067170

NMR studies of the stability, protonation States, and tautomerism of (13)C- AND (15)N-labeled aldimines of the coenzyme pyridoxal 5'-phosphate in water.

Monique Chan-Huot1, Shasad Sharif, Peter M Tolstoy, Michael D Toney, Hans-Heinrich Limbach.   

Abstract

We have measured the pH-dependent (1)H, (13)C, and (15)N NMR spectra of pyridoxal 5'-phosphate ((13)C(2)-PLP) mixed with equal amounts of either doubly (15)N-labeled diaminopropane, (15)N(α)-labeled l-lysine, or (15)N(ε)-labeled l-lysine as model systems for various intermediates of the transimination reaction in PLP-dependent enzymes. At low pH, only the hydrate and aldehyde forms of PLP and the free protonated diamines are present. Above pH 4, the formation of single- and double-headed aldimines (Schiff bases) with the added diamines is observed, and their (13)C and (15)N NMR parameters have been characterized. For 1:1 mixtures the single-headed aldimines dominate. In a similar way, the NMR parameters of the geminal diamine formed with diaminopropane at high pH are measured. However, no geminal diamine is formed with l-lysine. In contrast to the aldimine formed with the ε-amino group of lysine, the aldimine formed with the α-amino group is unstable at moderately high pH but dominates slightly below pH 10. By analyzing the NMR data, both the mole fractions of the different PLP species and up to 6 different protonation states including their pK(a) values were obtained. Furthermore, the data show that all Schiff bases are subject to a proton tautomerism along the intramolecular OHN hydrogen bond, where the zwitterionic form is favored before deprotonation occurs at high pH. This observation, as well as the observation that around pH 7 the different PLP species are present in comparable amounts, sheds new light on the mechanism of the transimination reaction.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 21067170     DOI: 10.1021/bi101061m

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  10 in total

Review 1.  Aspartate aminotransferase: an old dog teaches new tricks.

Authors:  Michael D Toney
Journal:  Arch Biochem Biophys       Date:  2013-10-09       Impact factor: 4.013

2.  Catalytic roles of βLys87 in tryptophan synthase: (15)N solid state NMR studies.

Authors:  Bethany G Caulkins; Chen Yang; Eduardo Hilario; Li Fan; Michael F Dunn; Leonard J Mueller
Journal:  Biochim Biophys Acta       Date:  2015-02-14

Review 3.  Controlling reaction specificity in pyridoxal phosphate enzymes.

Authors:  Michael D Toney
Journal:  Biochim Biophys Acta       Date:  2011-06-06

4.  Solid-state nuclear magnetic resonance studies delineate the role of the protein in activation of both aromatic rings of thiamin.

Authors:  Anand Balakrishnan; Sivakumar Paramasivam; Sumit Chakraborty; Tatyana Polenova; Frank Jordan
Journal:  J Am Chem Soc       Date:  2011-12-09       Impact factor: 15.419

5.  Catalytically active alkaline molten globular enzyme: Effect of pH and temperature on the structural integrity of 5-aminolevulinate synthase.

Authors:  Bosko M Stojanovski; Leonid Breydo; Gregory A Hunter; Vladimir N Uversky; Gloria C Ferreira
Journal:  Biochim Biophys Acta       Date:  2014-09-18

6.  Solution-State (17)O Quadrupole Central-Transition NMR Spectroscopy in the Active Site of Tryptophan Synthase.

Authors:  Robert P Young; Bethany G Caulkins; Dan Borchardt; Daryl N Bulloch; Cynthia K Larive; Michael F Dunn; Leonard J Mueller
Journal:  Angew Chem Int Ed Engl       Date:  2015-12-10       Impact factor: 15.336

7.  Protonation states of the tryptophan synthase internal aldimine active site from solid-state NMR spectroscopy: direct observation of the protonated Schiff base linkage to pyridoxal-5'-phosphate.

Authors:  Bethany G Caulkins; Baback Bastin; Chen Yang; Thomas J Neubauer; Robert P Young; Eduardo Hilario; Yu-ming M Huang; Chia-en A Chang; Li Fan; Michael F Dunn; Michael J Marsella; Leonard J Mueller
Journal:  J Am Chem Soc       Date:  2014-09-03       Impact factor: 15.419

8.  NMR Crystallography of a Carbanionic Intermediate in Tryptophan Synthase: Chemical Structure, Tautomerization, and Reaction Specificity.

Authors:  Bethany G Caulkins; Robert P Young; Ryan A Kudla; Chen Yang; Thomas J Bittbauer; Baback Bastin; Eduardo Hilario; Li Fan; Michael J Marsella; Michael F Dunn; Leonard J Mueller
Journal:  J Am Chem Soc       Date:  2016-11-11       Impact factor: 15.419

9.  Spectroscopic studies of amino acid ionic liquid-supported Schiff bases.

Authors:  Paula Ossowicz; Ewa Janus; Grzegorz Schroeder; Zbigniew Rozwadowski
Journal:  Molecules       Date:  2013-04-29       Impact factor: 4.411

10.  Observation and Kinetic Characterization of Transient Schiff Base Intermediates by CEST NMR Spectroscopy.

Authors:  Venkatraman Ramanujam; Cyril Charlier; Ad Bax
Journal:  Angew Chem Int Ed Engl       Date:  2019-09-17       Impact factor: 16.823

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.