Literature DB >> 2664781

Electrostatic fields in the active sites of lysozymes.

D P Sun1, D I Liao, S J Remington.   

Abstract

Considerable experimental evidence is in support of several aspects of the mechanism that has been proposed for the catalytic activity of lysozyme. However, the enzymatically catalyzed hydrolysis of polysaccharides proceeds over 5 orders of magnitude faster than that of model compounds that mimic the configuration of the substrate in the active site of the enzyme. Although several possible explanations for this rate enhancement have been discussed elsewhere, a definitive mechanism has not emerged. Here we report striking results obtained by classical electrodynamics, which suggest that bond breakage and the consequent separation of charge in lysozyme is promoted by a large electrostatic field across the active site cleft, produced in part by a very asymmetric distribution of charged residues on the enzyme surface. Lysozymes unrelated in amino acid sequence have similar distributions of charged residues and electric fields. The results reported here suggest that the electrostatic component of the rate enhancement is greater than 9 kcal.mol-1. Thus, electrostatic interactions may play a more important role in the enzymatic mechanism than has generally been appreciated.

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Year:  1989        PMID: 2664781      PMCID: PMC297622          DOI: 10.1073/pnas.86.14.5361

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  23 in total

1.  Crystallographic studies of the activity of hen egg-white lysozyme.

Authors:  C C Blake; L N Johnson; G A Mair; A C North; D C Phillips; V R Sarma
Journal:  Proc R Soc Lond B Biol Sci       Date:  1967-04-18

2.  The mechanisms of hydrolysis of glycosides and their revelance to enzyme-catalysed reactions.

Authors:  C A Vernon
Journal:  Proc R Soc Lond B Biol Sci       Date:  1967-04-18

3.  Prediction of electrostatic effects of engineering of protein charges.

Authors:  M J Sternberg; F R Hayes; A J Russell; P G Thomas; A R Fersht
Journal:  Nature       Date:  1987 Nov 5-11       Impact factor: 49.962

4.  Calculation of electrostatic potentials in an enzyme active site.

Authors:  M K Gilson; B H Honig
Journal:  Nature       Date:  1987 Nov 5-11       Impact factor: 49.962

5.  Calculation of the electric potential in the active site cleft due to alpha-helix dipoles.

Authors:  J Warwicker; H C Watson
Journal:  J Mol Biol       Date:  1982-06-05       Impact factor: 5.469

6.  Refinement of human lysozyme at 1.5 A resolution analysis of non-bonded and hydrogen-bond interactions.

Authors:  P J Artymiuk; C C Blake
Journal:  J Mol Biol       Date:  1981-11-15       Impact factor: 5.469

7.  Contributions of hydrogen bonds of Thr 157 to the thermodynamic stability of phage T4 lysozyme.

Authors:  T Alber; D P Sun; K Wilson; J A Wozniak; S P Cook; B W Matthews
Journal:  Nature       Date:  1987 Nov 5-11       Impact factor: 49.962

8.  Structure of hen egg-white lysozyme. A three-dimensional Fourier synthesis at 2 Angstrom resolution.

Authors:  C C Blake; D F Koenig; G A Mair; A C North; D C Phillips; V R Sarma
Journal:  Nature       Date:  1965-05-22       Impact factor: 49.962

9.  Site-directed mutagenesis of the catalytic residues Asp-52 and Glu-35 of chicken egg white lysozyme.

Authors:  B A Malcolm; S Rosenberg; M J Corey; J S Allen; A de Baetselier; J F Kirsch
Journal:  Proc Natl Acad Sci U S A       Date:  1989-01       Impact factor: 11.205

10.  Focusing of electric fields in the active site of Cu-Zn superoxide dismutase: effects of ionic strength and amino-acid modification.

Authors:  I Klapper; R Hagstrom; R Fine; K Sharp; B Honig
Journal:  Proteins       Date:  1986-09
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  14 in total

1.  A near-native state on the slow refolding pathway of hen lysozyme.

Authors:  S K Kulkarni; A E Ashcroft; M Carey; D Masselos; C V Robinson; S E Radford
Journal:  Protein Sci       Date:  1999-01       Impact factor: 6.725

2.  Calculating pKa values in enzyme active sites.

Authors:  Jens Erik Nielsen; J Andrew McCammon
Journal:  Protein Sci       Date:  2003-09       Impact factor: 6.725

3.  The inclusion of electrostatic hydration energies in molecular mechanics calculations.

Authors:  M K Gilson; B Honig
Journal:  J Comput Aided Mol Des       Date:  1991-02       Impact factor: 3.686

4.  Crystal and cryoEM structural studies of a cell wall degrading enzyme in the bacteriophage phi29 tail.

Authors:  Ye Xiang; Marc C Morais; Daniel N Cohen; Valorie D Bowman; Dwight L Anderson; Michael G Rossmann
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-07       Impact factor: 11.205

5.  Morphological changes of supported lipid bilayers induced by lysozyme: planar domain formation vs. multilayer stacking.

Authors:  Valeriya M Trusova; Galyna P Gorbenko; Irina Akopova; Julian G Molotkovsky; Ignacy Gryczynski; Julian Borejdo; Zygmunt Gryczynski
Journal:  Colloids Surf B Biointerfaces       Date:  2010-06-25       Impact factor: 5.268

Review 6.  Electric Fields and Enzyme Catalysis.

Authors:  Stephen D Fried; Steven G Boxer
Journal:  Annu Rev Biochem       Date:  2017-03-24       Impact factor: 23.643

7.  Measuring electric fields and noncovalent interactions using the vibrational stark effect.

Authors:  Stephen D Fried; Steven G Boxer
Journal:  Acc Chem Res       Date:  2015-03-23       Impact factor: 22.384

8.  Probing the conformation and orientation of adsorbed enzymes using side-chain modification.

Authors:  Kenan P Fears; Balakrishnan Sivaraman; Gary L Powell; Yonnie Wu; Robert A Latour
Journal:  Langmuir       Date:  2009-08-18       Impact factor: 3.882

9.  Histidine pKa shifts accompanying the inactivating Asp121----Asn substitution in a semisynthetic bovine pancreatic ribonuclease.

Authors:  M T Cederholm; J A Stuckey; M S Doscher; L Lee
Journal:  Proc Natl Acad Sci U S A       Date:  1991-09-15       Impact factor: 11.205

10.  Solute transport in orthorhombic lysozyme crystals: a molecular simulation study.

Authors:  Kourosh Malek
Journal:  Biotechnol Lett       Date:  2007-07-20       Impact factor: 2.461

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