Literature DB >> 3313058

Calculation of electrostatic potentials in an enzyme active site.

M K Gilson1, B H Honig.   

Abstract

To be able to calculate the contributions of individual amino acids to the electrostatic field of a protein would be of considerable value in designing proteins of enhanced or altered function and stability. Recent studies on the serine protease subtilisin provide direct measurements of the electrostatic potential in the active site of the enzyme produced by two charged amino acids. We have used these results to test a recently developed method for the calculation of electrostatic interactions between two specific sites on a protein. The extent of agreement between the theoretical and experimental results suggests that the continuum solvent model used in the calculations reproduces the essential features of the interaction.

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Year:  1987        PMID: 3313058     DOI: 10.1038/330084a0

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  84 in total

1.  Molecular dynamics and free-energy calculations applied to affinity maturation in antibody 48G7.

Authors:  L T Chong; Y Duan; L Wang; I Massova; P A Kollman
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-07       Impact factor: 11.205

2.  Optimization of binding electrostatics: charge complementarity in the barnase-barstar protein complex.

Authors:  L P Lee; B Tidor
Journal:  Protein Sci       Date:  2001-02       Impact factor: 6.725

3.  Modeling the kinetics of acylation of insulin using a recursive method for solving the systems of coupled differential equations.

Authors:  B A Grzybowski; J R Anderson; I Colton; S T Brittain; E I Shakhnovich; G M Whitesides
Journal:  Biophys J       Date:  2000-02       Impact factor: 4.033

4.  Electrostatic interactions in the GCN4 leucine zipper: substantial contributions arise from intramolecular interactions enhanced on binding.

Authors:  Z S Hendsch; B Tidor
Journal:  Protein Sci       Date:  1999-07       Impact factor: 6.725

5.  Altering dimerization specificity by changes in surface electrostatics.

Authors:  M J Nohaile; Z S Hendsch; B Tidor; R T Sauer
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-27       Impact factor: 11.205

6.  Protein-protein docking with multiple residue conformations and residue substitutions.

Authors:  David M Lorber; Maria K Udo; Brian K Shoichet
Journal:  Protein Sci       Date:  2002-06       Impact factor: 6.725

7.  SiteLight: binding-site prediction using phage display libraries.

Authors:  Inbal Halperin; Haim Wolfson; Ruth Nussinov
Journal:  Protein Sci       Date:  2003-07       Impact factor: 6.725

8.  The inclusion of electrostatic hydration energies in molecular mechanics calculations.

Authors:  M K Gilson; B Honig
Journal:  J Comput Aided Mol Des       Date:  1991-02       Impact factor: 3.686

9.  Mutational analysis of the carbohydrate binding activity of the tobacco lectin.

Authors:  Dieter Schouppe; Pierre Rougé; Yi Lasanajak; Annick Barre; David F Smith; Paul Proost; Els J M Van Damme
Journal:  Glycoconj J       Date:  2010-08-19       Impact factor: 2.916

10.  Effect of mutation of carboxyl side-chain amino acids near the heme on the midpoint potentials and ligand binding constants of nitrophorin 2 and its NO, histamine, and imidazole complexes.

Authors:  Robert E Berry; Maxim N Shokhirev; Arthur Y W Ho; Fei Yang; Tatiana K Shokhireva; Hongjun Zhang; Andrzej Weichsel; William R Montfort; F Ann Walker
Journal:  J Am Chem Soc       Date:  2009-02-18       Impact factor: 15.419

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