Literature DB >> 26609605

A Combined Charge and Energy Decomposition Scheme for Bond Analysis.

Mariusz P Mitoraj1, Artur Michalak1, Tom Ziegler1.   

Abstract

UNLABELLED: In the present study we have introduced a new scheme for chemical bond analysis by combining the Extended Transition State (ETS) method [ Theor. Chim. Acta 1977, 46, 1 ] with the Natural Orbitals for Chemical Valence (NOCV) theory [ J. Phys. Chem. A 2008, 112, 1933 ; J. Mol. MODEL: 2007, 13, 347 ]. The ETS-NOCV charge and energy decomposition scheme based on the Kohn-Sham approach makes it not only possible to decompose the deformation density, Δρ, into the different components (such as σ, π, δ, etc.) of the chemical bond, but it also provides the corresponding energy contributions to the total bond energy. Thus, the ETS-NOCV scheme offers a compact, qualitative, and quantitative picture of the chemical bond formation within one common theoretical framework. Although, the ETS-NOCV approach contains a certain arbitrariness in the definition of the molecular subsystems that constitute the whole molecule, it can be widely used for the description of different types of chemical bonds. The applicability of the ETS-NOCV scheme is demonstrated for single (H3X-XH3, for X = C, Si, Ge, Sn) and multiple (H2X═XH2, H3CX≡XCH3, for X = C, Ge) covalent bonds between main group elements, for sextuple and quadruple bonds between metal centers (Cr2, Mo2, W2, [Cl4CrCrCl4](4-)), and for double bonds between a metal and a main group element ((CO)5Cr═XH2, for X = C, Si, Ge, Sn). We include finally two applications involving hydrogen bonding. The first covers the adenine-thymine base pair and the second the interaction between C-H bonds and the metal center in the alkyl complex.

Entities:  

Year:  2009        PMID: 26609605     DOI: 10.1021/ct800503d

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  114 in total

1.  Theoretical description of halogen bonding - an insight based on the natural orbitals for chemical valence combined with the extended-transition-state method (ETS-NOCV).

Authors:  Mariusz P Mitoraj; Artur Michalak
Journal:  J Mol Model       Date:  2012-06-06       Impact factor: 1.810

2.  The assessment and application of an approach to noncovalent interactions: the energy decomposition analysis (EDA) in combination with DFT of revised dispersion correction (DFT-D3) with Slater-type orbital (STO) basis set.

Authors:  Wei Gao; Huajie Feng; Xiaopeng Xuan; Liuping Chen
Journal:  J Mol Model       Date:  2012-05-29       Impact factor: 1.810

3.  Theoretical description of hydrogen bonding in oxalic acid dimer and trimer based on the combined extended-transition-state energy decomposition analysis and natural orbitals for chemical valence (ETS-NOCV).

Authors:  Mariusz P Mitoraj; Rafał Kurczab; Marek Boczar; Artur Michalak
Journal:  J Mol Model       Date:  2010-05-28       Impact factor: 1.810

4.  Electronic structure and bonding of the dinuclear metal M2(CO)10 decacarbonyls: applications of natural orbitals for chemical valence.

Authors:  Rafik Menacer; Abdelghani May; Lotfi Belkhiri; Abdelhamid Mousser
Journal:  J Mol Model       Date:  2017-11-28       Impact factor: 1.810

5.  Applications of the ETS-NOCV method in descriptions of chemical reactions.

Authors:  Mariusz Paweł Mitoraj; Monika Parafiniuk; Monika Srebro; Michał Handzlik; Agnieszka Buczek; Artur Michalak
Journal:  J Mol Model       Date:  2011-03-29       Impact factor: 1.810

6.  Formation of active species from ruthenium alkylidene catalysts-an insight from computational perspective.

Authors:  Paweł Śliwa; Mariusz P Mitoraj; Filip Sagan; Jarosław Handzlik
Journal:  J Mol Model       Date:  2019-11-07       Impact factor: 1.810

7.  Natures of benzene-water and pyrrole-water interactions in the forms of σ and π types: theoretical studies from clusters to liquid mixture.

Authors:  Wei Gao; Jiqing Jiao; Huajie Feng; Xiaopeng Xuan; Liuping Chen
Journal:  J Mol Model       Date:  2012-11-23       Impact factor: 1.810

8.  Directional Dependence of Hydrogen Bonds: a Density-based Energy Decomposition Analysis and Its Implications on Force Field Development.

Authors:  Zhenyu Lu; Nengjie Zhou; Qin Wu; Yingkai Zhang
Journal:  J Chem Theory Comput       Date:  2011-12-13       Impact factor: 6.006

9.  Analysis of Density Functional Tight Binding with Natural Bonding Orbitals.

Authors:  Xiya Lu; Juan Duchimaza-Heredia; Qiang Cui
Journal:  J Phys Chem A       Date:  2019-08-15       Impact factor: 2.781

10.  Theoretical description of bonding in cis-W(CO)(4)(piperidine)(2) and its dimer.

Authors:  Mariusz P Mitoraj; Artur Michalak
Journal:  J Mol Model       Date:  2009-07-15       Impact factor: 1.810

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