Literature DB >> 23179765

Natures of benzene-water and pyrrole-water interactions in the forms of σ and π types: theoretical studies from clusters to liquid mixture.

Wei Gao1, Jiqing Jiao, Huajie Feng, Xiaopeng Xuan, Liuping Chen.   

Abstract

A combined and sequential use of quantum mechanical (QM) calculations and classical molecular dynamics (MD) simulations was made to investigate the σ and π types of hydrogen bond (HB) in benzene-water and pyrrole-water as clusters and as their liquid mixture, respectively. This paper aims at analyzing similarities and differences of these HBs resulted from QM and MD on an equal footing. Based on the optimized geometry at ωb97xD/aug-cc-pVTZ level of theory, the nature and property of σ and π types of HBs are unveiled by means of atoms in molecules (AIM), natural bond orbital (NBO) and energy decomposition analysis (EDA). In light of the above findings, MD simulation with OPLS-AA and SPC model was applied to study the liquid mixture at different temperatures. The MD results further characterize the behavior and structural properties of σ and π types HBs, which are somewhat different but reasonable for the clusters by QM. Finally, we provide a reasonable explanation for the different solubility between benzene/water and pyrrole/water.

Entities:  

Year:  2012        PMID: 23179765     DOI: 10.1007/s00894-012-1659-x

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  46 in total

1.  Computer simulation investigation of the water-benzene interface in a broad range of thermodynamic States from ambient to supercritical conditions.

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Journal:  J Phys Chem B       Date:  2005-09-08       Impact factor: 2.991

2.  Red-, blue-, or no-shift in hydrogen bonds: a unified explanation.

Authors:  Jorly Joseph; Eluvathingal D Jemmis
Journal:  J Am Chem Soc       Date:  2007-03-22       Impact factor: 15.419

3.  The water-benzene interaction: insight from electronic structure theories.

Authors:  Jie Ma; Dario Alfè; Angelos Michaelides; Enge Wang
Journal:  J Chem Phys       Date:  2009-04-21       Impact factor: 3.488

4.  Universal features of the electron density distribution in hydrogen-bonding regions: a comprehensive study involving H...X (X=H, C, N, O, F, S, Cl, pi) interactions.

Authors:  Ignasi Mata; Ibon Alkorta; Elies Molins; Enrique Espinosa
Journal:  Chemistry       Date:  2010-02-22       Impact factor: 5.236

5.  Red-shifted hydrogen bonds and blue-shifted van der Waals contact in the standard Watson-Crick adenine-thymine base pair.

Authors:  Pan-Pan Zhou; Wen-Yuan Qiu
Journal:  J Phys Chem A       Date:  2009-09-24       Impact factor: 2.781

6.  A thorough benchmark of density functional methods for general main group thermochemistry, kinetics, and noncovalent interactions.

Authors:  Lars Goerigk; Stefan Grimme
Journal:  Phys Chem Chem Phys       Date:  2011-03-07       Impact factor: 3.676

7.  Revealing noncovalent interactions.

Authors:  Erin R Johnson; Shahar Keinan; Paula Mori-Sánchez; Julia Contreras-García; Aron J Cohen; Weitao Yang
Journal:  J Am Chem Soc       Date:  2010-05-12       Impact factor: 15.419

8.  Van der Waals complexes of small molecules with benzenoid rings: influence of multipole moments on their mutual orientation.

Authors:  Brijesh Kumar Mishra; N Sathyamurthy
Journal:  J Phys Chem A       Date:  2007-02-23       Impact factor: 2.781

9.  Benzene-water (BZWn (n = 1-10)) clusters.

Authors:  M Prakash; K Gopal Samy; V Subramanian
Journal:  J Phys Chem A       Date:  2009-12-17       Impact factor: 2.781

10.  Benzene forms hydrogen bonds with water.

Authors:  S Suzuki; P G Green; R E Bumgarner; S Dasgupta; W A Goddard; G A Blake
Journal:  Science       Date:  1992-08-14       Impact factor: 47.728

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  2 in total

1.  MD simulation study of the diffusion and local structure of n-alkanes in liquid and supercritical methanol at infinite dilution.

Authors:  Huajie Feng; Wei Gao; Li Su; Zhenfan Sun; Liuping Chen
Journal:  J Mol Model       Date:  2017-05-30       Impact factor: 1.810

2.  Structural flexibility of 4,4'-methylene diphenyl diisocyanate (4,4'-MDI): evidence from first principles calculations.

Authors:  Pawel Rodziewicz; Jakub Goclon
Journal:  J Mol Model       Date:  2014-02-13       Impact factor: 1.810

  2 in total

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