Literature DB >> 22643965

The assessment and application of an approach to noncovalent interactions: the energy decomposition analysis (EDA) in combination with DFT of revised dispersion correction (DFT-D3) with Slater-type orbital (STO) basis set.

Wei Gao1, Huajie Feng, Xiaopeng Xuan, Liuping Chen.   

Abstract

An assessment study is presented about energy decomposition analysis (EDA) in combination with DFT including revised dispersion correction (DFT-D3) with Slater-type orbital (STO) basis set. There has been little knowledge about the performance of the EDA + DFT-D3 concerning STOs. In this assessment such an approach was applied to calculate noncovalent interaction energies and their corresponding components. Complexes in S22 set were used to evaluate the performance of EDA in conjunction with four representative types of GGA-functionals of DFT-D3 (BP86-D3, BLYP-D3, PBE-D3 and SSB-D3) with three STO basis sets ranging in complexity from DZP, TZ2P to QZ4P. The results showed that the approach of EDA + BLYP-D3/TZ2P has a better performance not only in terms of calculating noncovalent interaction energy quantitatively but also in analyzing corresponding energy components qualitatively. This approach (EDA + BLYP-D3/TZ2P) was thus applied further to two representative large-system complexes including porphine dimers and fullerene aggregates to gain a better insight into binding characteristics.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22643965     DOI: 10.1007/s00894-012-1425-0

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  48 in total

1.  Atomistic simulations of materials for optical chemical sensors: DFT-D calculations of molecular interactions between gas-phase analyte molecules and simple substrate models.

Authors:  Andrey A Safonov; Elena A Rykova; Alexander A Bagaturyants; Vyacheslav A Sazhnikov; Michael V Alfimov
Journal:  J Mol Model       Date:  2010-11-16       Impact factor: 1.810

2.  Fragment-Localized Kohn-Sham Orbitals via a Singles Configuration-Interaction Procedure and Application to Local Properties and Intermolecular Energy Decomposition Analysis.

Authors:  Peter Reinhardt; Jean-Philip Piquemal; Andreas Savin
Journal:  J Chem Theory Comput       Date:  2008-11-05       Impact factor: 6.006

3.  Design of Density Functionals by Combining the Method of Constraint Satisfaction with Parametrization for Thermochemistry, Thermochemical Kinetics, and Noncovalent Interactions.

Authors:  Yan Zhao; Nathan E Schultz; Donald G Truhlar
Journal:  J Chem Theory Comput       Date:  2006-03       Impact factor: 6.006

4.  Assessment of the Performance of the M05-2X and M06-2X Exchange-Correlation Functionals for Noncovalent Interactions in Biomolecules.

Authors:  Edward G Hohenstein; Samuel T Chill; C David Sherrill
Journal:  J Chem Theory Comput       Date:  2008-11-19       Impact factor: 6.006

5.  Two complementary molecular energy decomposition schemes: the Mayer and Ziegler-Rauk methods in comparison.

Authors:  Sergei F Vyboishchikov; Andreas Krapp; Gernot Frenking
Journal:  J Chem Phys       Date:  2008-10-14       Impact factor: 3.488

6.  Discrete supramolecular donor-acceptor complexes.

Authors:  S Shankara Gayathri; Mateusz Wielopolski; Emilio M Pérez; Gustavo Fernández; Luis Sánchez; Rafael Viruela; Enrique Ortí; Dirk M Guldi; Nazario Martín
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

7.  Weighting non-covalent forces in the molecular recognition of C(60). Relevance of concave-convex complementarity.

Authors:  Emilio M Pérez; Agostina L Capodilupo; Gustavo Fernández; Luis Sánchez; Pedro M Viruela; Rafael Viruela; Enrique Ortí; Massimo Bietti; Nazario Martín
Journal:  Chem Commun (Camb)       Date:  2008-08-12       Impact factor: 6.222

8.  How molecules stick together in organic crystals: weak intermolecular interactions.

Authors:  Jack D Dunitz; Angelo Gavezzotti
Journal:  Chem Soc Rev       Date:  2009-07-13       Impact factor: 54.564

9.  A thorough benchmark of density functional methods for general main group thermochemistry, kinetics, and noncovalent interactions.

Authors:  Lars Goerigk; Stefan Grimme
Journal:  Phys Chem Chem Phys       Date:  2011-03-07       Impact factor: 3.676

10.  Spin-component scaled coupled-clusters singles and doubles optimized towards calculation of noncovalent interactions.

Authors:  Michal Pitonák; Jan Rezác; Pavel Hobza
Journal:  Phys Chem Chem Phys       Date:  2010-07-12       Impact factor: 3.676

View more
  3 in total

1.  DFT study of CO2 and H2O co-adsorption on carbon models of coal surface.

Authors:  Zhengyang Gao; Yi Ding
Journal:  J Mol Model       Date:  2017-05-12       Impact factor: 1.810

2.  DFT study of water adsorption on lignite molecule surface.

Authors:  Zhengyang Gao; Yi Ding; Weijie Yang; Wentao Han
Journal:  J Mol Model       Date:  2017-01-07       Impact factor: 1.810

3.  Electrochemical sensing behavior of graphdiyne nanoflake towards uric acid: a quantum chemical approach.

Authors:  Misbah Asif; Hasnain Sajid; Khurshid Ayub; Mazhar Amjad Gilani; Mohammed Salim Akhter; Tariq Mahmood
Journal:  J Mol Model       Date:  2021-08-10       Impact factor: 1.810

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.