Literature DB >> 22669533

Theoretical description of halogen bonding - an insight based on the natural orbitals for chemical valence combined with the extended-transition-state method (ETS-NOCV).

Mariusz P Mitoraj1, Artur Michalak.   

Abstract

In the present study we have characterized the halogen bonding in selected molecules H3N-ICF3 (1-NH 3 ), (PH3)2C-ICF3 (1-CPH 3 ), C3H7Br-(IN2H2C3)2C6H4 (2-Br), H2-(IN2H2C3)2C6H4 (2-H 2 ) and Cl-(IC6F5)2C7H10N2O5 (3-Cl), containing from one halogen bond (1-NH 3 , 1-CPH 3 ) up to four connections in 3-Cl (the two Cl-HN and two Cl-I), based on recently proposed ETS-NOCV analysis. It was found based on the NOCV-deformation density components that the halogen bonding C-X (…) B (X-halogen atom, B-Lewis base), contains a large degree of covalent contribution (the charge transfer to X (…) B inter-atomic region) supported further by the electron donation from base atom B to the empty σ*(C-X) orbital. Such charge transfers can be of similar importance compared to the electrostatic stabilization. Further, the covalent part of halogen bonding is due to the presence of σ-hole at outer part of halogen atom (X). ETS-NOCV approach allowed to visualize formation of the σ-hole at iodine atom of CF3I molecule. It has also been demonstrated that strongly electrophilic halogen bond donor, [C6H4(C3H2N2I)2][OTf]2, can activate chemically inert isopropyl bromide (2-Br) moiety via formation of Br-I bonding and bind the hydrogen molecule (2-H 2 ). Finally, ETS-NOCV analysis performed for 3-Cl leads to the conclusion that, in terms of the orbital-interaction component, the strength of halogen (Cl-I) bond is roughly three times more important than the hydrogen bonding (Cl-HN).

Entities:  

Year:  2012        PMID: 22669533      PMCID: PMC3825488          DOI: 10.1007/s00894-012-1474-4

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  26 in total

1.  Blue-Shifting Hydrogen Bonds.

Authors:  Pavel Hobza; Zdenek Havlas
Journal:  Chem Rev       Date:  2000-11-08       Impact factor: 60.622

2.  The halogen bond: an interim perspective.

Authors:  Anthony C Legon
Journal:  Phys Chem Chem Phys       Date:  2010-05-21       Impact factor: 3.676

3.  Applications of natural orbitals for chemical valence in a description of bonding in conjugated molecules.

Authors:  Mariusz Mitoraj; Artur Michalak
Journal:  J Mol Model       Date:  2008-02-16       Impact factor: 1.810

4.  Halogen-bond-induced activation of a carbon-heteroatom bond.

Authors:  Sebastian M Walter; Florian Kniep; Eberhardt Herdtweck; Stefan M Huber
Journal:  Angew Chem Int Ed Engl       Date:  2011-06-29       Impact factor: 15.336

5.  Anion receptors composed of hydrogen- and halogen-bond donor groups: modulating selectivity with combinations of distinct noncovalent interactions.

Authors:  Michael G Chudzinski; Corey A McClary; Mark S Taylor
Journal:  J Am Chem Soc       Date:  2011-06-13       Impact factor: 15.419

6.  Halogen bonding: the sigma-hole. Proceedings of "Modeling interactions in biomolecules II", Prague, September 5th-9th, 2005.

Authors:  Timothy Clark; Matthias Hennemann; Jane S Murray; Peter Politzer
Journal:  J Mol Model       Date:  2006-08-23       Impact factor: 1.810

7.  Halogen bonds in biological molecules.

Authors:  Pascal Auffinger; Franklin A Hays; Eric Westhof; P Shing Ho
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-19       Impact factor: 11.205

8.  Theoretical analysis of the resonance assisted hydrogen bond based on the combined extended transition state method and natural orbitals for chemical valence scheme.

Authors:  Rafał Kurczab; Mariusz P Mitoraj; Artur Michalak; Tom Ziegler
Journal:  J Phys Chem A       Date:  2010-08-26       Impact factor: 2.781

9.  Divalent carbon(0) chemistry, part 1: Parent compounds.

Authors:  Ralf Tonner; Gernot Frenking
Journal:  Chemistry       Date:  2008       Impact factor: 5.236

10.  Halogen bonding in supramolecular chemistry.

Authors:  Pierangelo Metrangolo; Franck Meyer; Tullio Pilati; Giuseppe Resnati; Giancarlo Terraneo
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

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  6 in total

1.  Electronic structure and bonding of the dinuclear metal M2(CO)10 decacarbonyls: applications of natural orbitals for chemical valence.

Authors:  Rafik Menacer; Abdelghani May; Lotfi Belkhiri; Abdelhamid Mousser
Journal:  J Mol Model       Date:  2017-11-28       Impact factor: 1.810

2.  Molecular properties of metal difluorides and their interactions with CO2 and H2O molecules: a DFT investigation.

Authors:  Agnes Lincy Arokiyanathan; Senthilkumar Lakshmipathi
Journal:  J Mol Model       Date:  2017-11-18       Impact factor: 1.810

3.  Halogen Bonds in Ligand-Protein Systems: Molecular Orbital Theory for Drug Design.

Authors:  Enrico Margiotta; Stephanie C C van der Lubbe; Lucas de Azevedo Santos; Gabor Paragi; Stefano Moro; F Matthias Bickelhaupt; Célia Fonseca Guerra
Journal:  J Chem Inf Model       Date:  2020-02-13       Impact factor: 4.956

Review 4.  Charge Displacement Analysis-A Tool to Theoretically Characterize the Charge Transfer Contribution of Halogen Bonds.

Authors:  Gianluca Ciancaleoni; Francesca Nunzi; Leonardo Belpassi
Journal:  Molecules       Date:  2020-01-11       Impact factor: 4.411

5.  The Importance of Electrostatics and Polarization for Noncovalent Interactions: Ionic Hydrogen Bonds vs Ionic Halogen Bonds.

Authors:  Tore Brinck; André Nyberg Borrfors
Journal:  J Mol Model       Date:  2022-08-25       Impact factor: 2.172

Review 6.  The Halogen Bond.

Authors:  Gabriella Cavallo; Pierangelo Metrangolo; Roberto Milani; Tullio Pilati; Arri Priimagi; Giuseppe Resnati; Giancarlo Terraneo
Journal:  Chem Rev       Date:  2016-01-26       Impact factor: 60.622

  6 in total

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