Literature DB >> 26578787

Stochastic electrotransport selectively enhances the transport of highly electromobile molecules.

Sung-Yon Kim1, Jae Hun Cho2, Evan Murray3, Naveed Bakh2, Heejin Choi1, Kimberly Ohn2, Luzdary Ruelas2, Austin Hubbert2, Meg McCue3, Sara L Vassallo1, Philipp J Keller4, Kwanghun Chung5.   

Abstract

Nondestructive chemical processing of porous samples such as fixed biological tissues typically relies on molecular diffusion. Diffusion into a porous structure is a slow process that significantly delays completion of chemical processing. Here, we present a novel electrokinetic method termed stochastic electrotransport for rapid nondestructive processing of porous samples. This method uses a rotational electric field to selectively disperse highly electromobile molecules throughout a porous sample without displacing the low-electromobility molecules that constitute the sample. Using computational models, we show that stochastic electrotransport can rapidly disperse electromobile molecules in a porous medium. We apply this method to completely clear mouse organs within 1-3 days and to stain them with nuclear dyes, proteins, and antibodies within 1 day. Our results demonstrate the potential of stochastic electrotransport to process large and dense tissue samples that were previously infeasible in time when relying on diffusion.

Entities:  

Keywords:  CLARITY; molecular transport; stochastic electrotransport; tissue clearing; tissue labeling

Mesh:

Substances:

Year:  2015        PMID: 26578787      PMCID: PMC4655572          DOI: 10.1073/pnas.1510133112

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  32 in total

1.  3D-reconstruction of blood vessels by ultramicroscopy.

Authors:  Nina Jährling; Klaus Becker; Hans-Ulrich Dodt
Journal:  Organogenesis       Date:  2009-10       Impact factor: 2.500

Review 2.  Spatially resolved transcriptomics and beyond.

Authors:  Nicola Crosetto; Magda Bienko; Alexander van Oudenaarden
Journal:  Nat Rev Genet       Date:  2014-12-02       Impact factor: 53.242

3.  iDISCO: a simple, rapid method to immunolabel large tissue samples for volume imaging.

Authors:  Nicolas Renier; Zhuhao Wu; David J Simon; Jing Yang; Pablo Ariel; Marc Tessier-Lavigne
Journal:  Cell       Date:  2014-10-30       Impact factor: 41.582

4.  Three-dimensional imaging of solvent-cleared organs using 3DISCO.

Authors:  Ali Ertürk; Klaus Becker; Nina Jährling; Christoph P Mauch; Caroline D Hojer; Jackson G Egen; Farida Hellal; Frank Bradke; Morgan Sheng; Hans-Ulrich Dodt
Journal:  Nat Protoc       Date:  2012-10-11       Impact factor: 13.491

5.  Whole-brain imaging with single-cell resolution using chemical cocktails and computational analysis.

Authors:  Etsuo A Susaki; Kazuki Tainaka; Dimitri Perrin; Fumiaki Kishino; Takehiro Tawara; Tomonobu M Watanabe; Chihiro Yokoyama; Hirotaka Onoe; Megumi Eguchi; Shun Yamaguchi; Takaya Abe; Hiroshi Kiyonari; Yoshihiro Shimizu; Atsushi Miyawaki; Hideo Yokota; Hiroki R Ueda
Journal:  Cell       Date:  2014-04-17       Impact factor: 41.582

6.  Ultramicroscopy: three-dimensional visualization of neuronal networks in the whole mouse brain.

Authors:  Hans-Ulrich Dodt; Ulrich Leischner; Anja Schierloh; Nina Jährling; Christoph Peter Mauch; Katrin Deininger; Jan Michael Deussing; Matthias Eder; Walter Zieglgänsberger; Klaus Becker
Journal:  Nat Methods       Date:  2007-03-25       Impact factor: 28.547

7.  Lectin histochemistry of mammalian endothelium.

Authors:  J Alroy; V Goyal; E Skutelsky
Journal:  Histochemistry       Date:  1987

8.  Three-dimensional microscopy of the tumor microenvironment in vivo using optical frequency domain imaging.

Authors:  Benjamin J Vakoc; Ryan M Lanning; James A Tyrrell; Timothy P Padera; Lisa A Bartlett; Triantafyllos Stylianopoulos; Lance L Munn; Guillermo J Tearney; Dai Fukumura; Rakesh K Jain; Brett E Bouma
Journal:  Nat Med       Date:  2009-09-13       Impact factor: 53.440

9.  Optical projection tomography as a tool for 3D microscopy and gene expression studies.

Authors:  James Sharpe; Ulf Ahlgren; Paul Perry; Bill Hill; Allyson Ross; Jacob Hecksher-Sørensen; Richard Baldock; Duncan Davidson
Journal:  Science       Date:  2002-04-19       Impact factor: 47.728

10.  Perturbed neural activity disrupts cerebral angiogenesis during a postnatal critical period.

Authors:  Christina Whiteus; Catarina Freitas; Jaime Grutzendler
Journal:  Nature       Date:  2013-12-04       Impact factor: 49.962

View more
  73 in total

Review 1.  A beginner's guide to tissue clearing.

Authors:  Pablo Ariel
Journal:  Int J Biochem Cell Biol       Date:  2017-01-07       Impact factor: 5.085

Review 2.  Extracting structural and functional features of widely distributed biological circuits with single cell resolution via tissue clearing and delivery vectors.

Authors:  Jennifer Brooke Treweek; Viviana Gradinaru
Journal:  Curr Opin Biotechnol       Date:  2016-07-06       Impact factor: 9.740

3.  Tissue Clearing and Its Application to Bone and Dental Tissues.

Authors:  D Jing; Y Yi; W Luo; S Zhang; Q Yuan; J Wang; E Lachika; Z Zhao; H Zhao
Journal:  J Dent Res       Date:  2019-04-22       Impact factor: 6.116

4.  Imaging the brain in 3D using a combination of CUBIC and immunofluorescence staining.

Authors:  Yangyang Xu; Peng Li; Mengqi Wang; Jie Zhang; Wei Wang
Journal:  Biomed Opt Express       Date:  2019-04-01       Impact factor: 3.732

5.  Tissue Optical Clearing for Biomedical Imaging: From In Vitro to In Vivo.

Authors:  Tingting Yu; Dongyu Li; Dan Zhu
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

Review 6.  Tutorial: practical considerations for tissue clearing and imaging.

Authors:  Kurt R Weiss; Fabian F Voigt; Douglas P Shepherd; Jan Huisken
Journal:  Nat Protoc       Date:  2021-05-21       Impact factor: 13.491

7.  A multilevel framework to reconstruct anatomical 3D models of the hepatic vasculature in rat livers.

Authors:  Geert Peeters; Charlotte Debbaut; Wim Laleman; Diethard Monbaliu; Ingrid Vander Elst; Jan R Detrez; Tim Vandecasteele; Thomas De Schryver; Luc Van Hoorebeke; Kasper Favere; Jonas Verbeke; Patrick Segers; Pieter Cornillie; Winnok H De Vos
Journal:  J Anat       Date:  2016-12-20       Impact factor: 2.610

Review 8.  Whole-Brain Analysis of Cells and Circuits by Tissue Clearing and Light-Sheet Microscopy.

Authors:  Tomoyuki Mano; Alexandre Albanese; Hans-Ulrich Dodt; Ali Erturk; Viviana Gradinaru; Jennifer B Treweek; Atsushi Miyawaki; Kwanghun Chung; Hiroki R Ueda
Journal:  J Neurosci       Date:  2018-10-31       Impact factor: 6.167

9.  Optimizing probes to image cleared tissue.

Authors:  Vivien Marx
Journal:  Nat Methods       Date:  2016-02-25       Impact factor: 28.547

Review 10.  Whole-Brain Microscopy Meets In Vivo Neuroimaging: Techniques, Benefits, and Limitations.

Authors:  Markus Aswendt; Martin Schwarz; Walid M Abdelmoula; Jouke Dijkstra; Stefanie Dedeurwaerdere
Journal:  Mol Imaging Biol       Date:  2017-02       Impact factor: 3.488

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.