Literature DB >> 23060243

Three-dimensional imaging of solvent-cleared organs using 3DISCO.

Ali Ertürk1, Klaus Becker, Nina Jährling, Christoph P Mauch, Caroline D Hojer, Jackson G Egen, Farida Hellal, Frank Bradke, Morgan Sheng, Hans-Ulrich Dodt.   

Abstract

The examination of tissue histology by light microscopy is a fundamental tool for investigating the structure and function of organs under normal and disease states. Many current techniques for tissue sectioning, imaging and analysis are time-consuming, and they present major limitations for 3D tissue reconstruction. The introduction of methods to achieve the optical clearing and subsequent light-sheet laser scanning of entire transparent organs without sectioning represents a major advance in the field. We recently developed a highly reproducible and versatile clearing procedure called 3D imaging of solvent-cleared organs, or 3DISCO, which is applicable to diverse tissues including brain, spinal cord, immune organs and tumors. Here we describe a detailed protocol for performing 3DISCO and present its application to various microscopy techniques, including example results from various mouse tissues. The tissue clearing takes as little as 3 h, and imaging can be completed in ∼45 min. 3DISCO is a powerful technique that offers 3D histological views of tissues in a fraction of the time and labor required to complete standard histology studies.

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Year:  2012        PMID: 23060243     DOI: 10.1038/nprot.2012.119

Source DB:  PubMed          Journal:  Nat Protoc        ISSN: 1750-2799            Impact factor:   13.491


  25 in total

1.  Correction methods for three-dimensional reconstructions from confocal images: I. Tissue shrinking and axial scaling.

Authors:  D Bucher; M Scholz; M Stetter; K Obermayer; H J Pflüger
Journal:  J Neurosci Methods       Date:  2000-07-31       Impact factor: 2.390

Review 2.  False resurrections: distinguishing regenerated from spared axons in the injured central nervous system.

Authors:  Oswald Steward; Binhai Zheng; Marc Tessier-Lavigne
Journal:  J Comp Neurol       Date:  2003-04-21       Impact factor: 3.215

3.  3D-reconstruction of blood vessels by ultramicroscopy.

Authors:  Nina Jährling; Klaus Becker; Hans-Ulrich Dodt
Journal:  Organogenesis       Date:  2009-10       Impact factor: 2.500

4.  Optical sectioning deep inside live embryos by selective plane illumination microscopy.

Authors:  Jan Huisken; Jim Swoger; Filippo Del Bene; Joachim Wittbrodt; Ernst H K Stelzer
Journal:  Science       Date:  2004-08-13       Impact factor: 47.728

5.  Thin laser light sheet microscope for microbial oceanography.

Authors:  Eran Fuchs; Jules Jaffe; Richard Long; Farooq Azam
Journal:  Opt Express       Date:  2002-01-28       Impact factor: 3.894

6.  A fundamental limitation of linearized algorithms for diffuse optical tomography.

Authors:  D Boas
Journal:  Opt Express       Date:  1997-12-22       Impact factor: 3.894

7.  Targeted gene delivery to telencephalic inhibitory neurons by directional in utero electroporation.

Authors:  Víctor Borrell; Yumiko Yoshimura; Edward M Callaway
Journal:  J Neurosci Methods       Date:  2004-12-02       Impact factor: 2.390

8.  Ultramicroscopy: three-dimensional visualization of neuronal networks in the whole mouse brain.

Authors:  Hans-Ulrich Dodt; Ulrich Leischner; Anja Schierloh; Nina Jährling; Christoph Peter Mauch; Katrin Deininger; Jan Michael Deussing; Matthias Eder; Walter Zieglgänsberger; Klaus Becker
Journal:  Nat Methods       Date:  2007-03-25       Impact factor: 28.547

9.  Ultramicroscopy: 3D reconstruction of large microscopical specimens.

Authors:  K Becker; N Jährling; E R Kramer; F Schnorrer; H-U Dodt
Journal:  J Biophotonics       Date:  2008-03       Impact factor: 3.207

10.  Chemical clearing and dehydration of GFP expressing mouse brains.

Authors:  Klaus Becker; Nina Jährling; Saiedeh Saghafi; Reto Weiler; Hans-Ulrich Dodt
Journal:  PLoS One       Date:  2012-03-30       Impact factor: 3.240

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  357 in total

1.  Optical properties of mouse brain tissue after optical clearing with FocusClear™.

Authors:  Austin J Moy; Bernard V Capulong; Rolf B Saager; Matthew P Wiersma; Patrick C Lo; Anthony J Durkin; Bernard Choi
Journal:  J Biomed Opt       Date:  2015       Impact factor: 3.170

2.  Expanding the power of recombinase-based labeling to uncover cellular diversity.

Authors:  Nicholas W Plummer; Irina Y Evsyukova; Sabrina D Robertson; Jacqueline de Marchena; Charles J Tucker; Patricia Jensen
Journal:  Development       Date:  2015-11-19       Impact factor: 6.868

3.  Advanced CUBIC protocols for whole-brain and whole-body clearing and imaging.

Authors:  Etsuo A Susaki; Kazuki Tainaka; Dimitri Perrin; Hiroko Yukinaga; Akihiro Kuno; Hiroki R Ueda
Journal:  Nat Protoc       Date:  2015-10-08       Impact factor: 13.491

4.  Stochastic electrotransport selectively enhances the transport of highly electromobile molecules.

Authors:  Sung-Yon Kim; Jae Hun Cho; Evan Murray; Naveed Bakh; Heejin Choi; Kimberly Ohn; Luzdary Ruelas; Austin Hubbert; Meg McCue; Sara L Vassallo; Philipp J Keller; Kwanghun Chung
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-02       Impact factor: 11.205

5.  Whole-body tissue stabilization and selective extractions via tissue-hydrogel hybrids for high-resolution intact circuit mapping and phenotyping.

Authors:  Ken Y Chan; Nicholas C Flytzanis; Bin Yang; Jennifer B Treweek; Benjamin E Deverman; Alon Greenbaum; Antti Lignell; Cheng Xiao; Long Cai; Mark S Ladinsky; Pamela J Bjorkman; Charless C Fowlkes; Viviana Gradinaru
Journal:  Nat Protoc       Date:  2015-10-22       Impact factor: 13.491

6.  Ultramicroscopy: development and outlook.

Authors:  Hans-Ulrich Dodt; Saiedeh Saghafi; Klaus Becker; Nina Jährling; Christian Hahn; Marko Pende; Martina Wanis; Axel Niendorf
Journal:  Neurophotonics       Date:  2015-11-09       Impact factor: 3.593

7.  Advancing multiscale structural mapping of the brain through fluorescence imaging and analysis across length scales.

Authors:  L J Hogstrom; S M Guo; K Murugadoss; M Bathe
Journal:  Interface Focus       Date:  2016-02-06       Impact factor: 3.906

Review 8.  Extracting structural and functional features of widely distributed biological circuits with single cell resolution via tissue clearing and delivery vectors.

Authors:  Jennifer Brooke Treweek; Viviana Gradinaru
Journal:  Curr Opin Biotechnol       Date:  2016-07-06       Impact factor: 9.740

9.  The use of optical clearing and multiphoton microscopy for investigation of three-dimensional tissue-engineered constructs.

Authors:  Elizabeth A Calle; Sam Vesuna; Sashka Dimitrievska; Kevin Zhou; Angela Huang; Liping Zhao; Laura E Niklason; Michael J Levene
Journal:  Tissue Eng Part C Methods       Date:  2014-01-16       Impact factor: 3.056

10.  Three-Dimensional Analysis of the Human Pancreas.

Authors:  Jonas L Fowler; Steve Seung-Young Lee; Zachary C Wesner; Scott K Olehnik; Stephen J Kron; Manami Hara
Journal:  Endocrinology       Date:  2018-03-01       Impact factor: 4.736

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