Literature DB >> 27629640

Unravelling biological macromolecules with cryo-electron microscopy.

Rafael Fernandez-Leiro1, Sjors H W Scheres1.   

Abstract

Knowledge of the three-dimensional structures of proteins and other biological macromolecules often aids understanding of how they perform complicated tasks in the cell. Because many such tasks involve the cleavage or formation of chemical bonds, structural characterization at the atomic level is most useful. Developments in the electron microscopy of frozen hydrated samples (cryo-electron microscopy) are providing unprecedented opportunities for the structural characterization of biological macromolecules. This is resulting in a wave of information about processes in the cell that were impossible to characterize with existing techniques in structural biology.

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Year:  2016        PMID: 27629640      PMCID: PMC5074357          DOI: 10.1038/nature19948

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  120 in total

1.  Structure of the eukaryotic MCM complex at 3.8 Å.

Authors:  Ningning Li; Yuanliang Zhai; Yixiao Zhang; Wanqiu Li; Maojun Yang; Jianlin Lei; Bik-Kwoon Tye; Ning Gao
Journal:  Nature       Date:  2015-07-29       Impact factor: 49.962

2.  Structure of the voltage-gated calcium channel Cav1.1 complex.

Authors:  Jianping Wu; Zhen Yan; Zhangqiang Li; Chuangye Yan; Shan Lu; Mengqiu Dong; Nieng Yan
Journal:  Science       Date:  2015-12-18       Impact factor: 47.728

3.  Molecular architecture of the human U4/U6.U5 tri-snRNP.

Authors:  Dmitry E Agafonov; Berthold Kastner; Olexandr Dybkov; Romina V Hofele; Wen-Ti Liu; Henning Urlaub; Reinhard Lührmann; Holger Stark
Journal:  Science       Date:  2016-02-18       Impact factor: 47.728

4.  Structure of the yeast mitochondrial large ribosomal subunit.

Authors:  Alexey Amunts; Alan Brown; Xiao-Chen Bai; Jose L Llácer; Tanweer Hussain; Paul Emsley; Fei Long; Garib Murshudov; Sjors H W Scheres; V Ramakrishnan
Journal:  Science       Date:  2014-03-28       Impact factor: 47.728

5.  Structural basis for retroviral integration into nucleosomes.

Authors:  Daniel P Maskell; Ludovic Renault; Erik Serrao; Paul Lesbats; Rishi Matadeen; Stephen Hare; Dirk Lindemann; Alan N Engelman; Alessandro Costa; Peter Cherepanov
Journal:  Nature       Date:  2015-06-10       Impact factor: 49.962

6.  Structure of the rabbit ryanodine receptor RyR1 at near-atomic resolution.

Authors:  Zhen Yan; Xiaochen Bai; Chuangye Yan; Jianping Wu; Zhangqiang Li; Tian Xie; Wei Peng; Changcheng Yin; Xueming Li; Sjors H W Scheres; Yigong Shi; Nieng Yan
Journal:  Nature       Date:  2014-12-15       Impact factor: 49.962

7.  Structure- and function-based design of Plasmodium-selective proteasome inhibitors.

Authors:  Hao Li; Anthony J O'Donoghue; Wouter A van der Linden; Stanley C Xie; Euna Yoo; Ian T Foe; Leann Tilley; Charles S Craik; Paula C A da Fonseca; Matthew Bogyo
Journal:  Nature       Date:  2016-02-11       Impact factor: 49.962

8.  Atomic structure of the APC/C and its mechanism of protein ubiquitination.

Authors:  Leifu Chang; Ziguo Zhang; Jing Yang; Stephen H McLaughlin; David Barford
Journal:  Nature       Date:  2015-06-15       Impact factor: 49.962

9.  Cryo-EM single particle analysis with the Volta phase plate.

Authors:  Radostin Danev; Wolfgang Baumeister
Journal:  Elife       Date:  2016-03-07       Impact factor: 8.140

10.  TRPV1 structures in nanodiscs reveal mechanisms of ligand and lipid action.

Authors:  Yuan Gao; Erhu Cao; David Julius; Yifan Cheng
Journal:  Nature       Date:  2016-05-18       Impact factor: 49.962

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  99 in total

Review 1.  Challenges and opportunities in cryo-EM single-particle analysis.

Authors:  Dmitry Lyumkis
Journal:  J Biol Chem       Date:  2019-02-25       Impact factor: 5.157

2.  The dynamic conformational landscape of the protein methyltransferase SETD8.

Authors:  Shi Chen; Rafal P Wiewiora; Fanwang Meng; Nicolas Babault; Anqi Ma; Wenyu Yu; Kun Qian; Hao Hu; Hua Zou; Junyi Wang; Shijie Fan; Gil Blum; Fabio Pittella-Silva; Kyle A Beauchamp; Wolfram Tempel; Hualiang Jiang; Kaixian Chen; Robert J Skene; Yujun George Zheng; Peter J Brown; Jian Jin; Cheng Luo; John D Chodera; Minkui Luo
Journal:  Elife       Date:  2019-05-13       Impact factor: 8.140

3.  Multi-body Refinement of Cryo-EM Images in RELION.

Authors:  Takanori Nakane; Sjors H W Scheres
Journal:  Methods Mol Biol       Date:  2021

Review 4.  Assembly, structure, function and regulation of type III secretion systems.

Authors:  Wanyin Deng; Natalie C Marshall; Jennifer L Rowland; James M McCoy; Liam J Worrall; Andrew S Santos; Natalie C J Strynadka; B Brett Finlay
Journal:  Nat Rev Microbiol       Date:  2017-04-10       Impact factor: 60.633

5.  Modeling Protein Excited-state Structures from "Over-length" Chemical Cross-links.

Authors:  Yue-He Ding; Zhou Gong; Xu Dong; Kan Liu; Zhu Liu; Chao Liu; Si-Min He; Meng-Qiu Dong; Chun Tang
Journal:  J Biol Chem       Date:  2016-12-19       Impact factor: 5.157

Review 6.  New approaches towards the understanding of integral membrane proteins: A structural perspective on G protein-coupled receptors.

Authors:  Reinhard Grisshammer
Journal:  Protein Sci       Date:  2017-06-07       Impact factor: 6.725

Review 7.  Approaches to target tractability assessment - a practical perspective.

Authors:  Kristin K Brown; Michael M Hann; Ami S Lakdawala; Rita Santos; Pamela J Thomas; Kieran Todd
Journal:  Medchemcomm       Date:  2018-02-14       Impact factor: 3.597

8.  Frozen-hydrated chromatin from metaphase chromosomes has an interdigitated multilayer structure.

Authors:  Andrea Chicano; Eva Crosas; Joaquín Otón; Roberto Melero; Benjamin D Engel; Joan-Ramon Daban
Journal:  EMBO J       Date:  2019-01-04       Impact factor: 11.598

9.  High-Throughput Cryo-EM Enabled by User-Free Preprocessing Routines.

Authors:  Yilai Li; Jennifer N Cash; John J G Tesmer; Michael A Cianfrocco
Journal:  Structure       Date:  2020-04-14       Impact factor: 5.006

Review 10.  Identification and Quantification of Proteoforms by Mass Spectrometry.

Authors:  Leah V Schaffer; Robert J Millikin; Rachel M Miller; Lissa C Anderson; Ryan T Fellers; Ying Ge; Neil L Kelleher; Richard D LeDuc; Xiaowen Liu; Samuel H Payne; Liangliang Sun; Paul M Thomas; Trisha Tucholski; Zhe Wang; Si Wu; Zhijie Wu; Dahang Yu; Michael R Shortreed; Lloyd M Smith
Journal:  Proteomics       Date:  2019-05       Impact factor: 3.984

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