Literature DB >> 26538132

Genetic variations in STAT4,C2,HLA-DRB1 and HLA-DQ associated with risk of hepatitis B virus-related liver cirrhosis.

De-Ke Jiang1,2,3,4,5,6, Xiao-Pin Ma1, Xiaopan Wu7, Lijun Peng8, Jianhua Yin9, Yunjie Dan10, Hui-Xing Huang1, Dong-Lin Ding1, Lu-Yao Zhang1, Zhuqing Shi1,2,3,4, Pengyin Zhang1,2,3,4, Hongjie Yu1,2,3,4, Jielin Sun5, S Lilly Zheng5,6, Guohong Deng10, Jianfeng Xu1,2,3,4,5,6,11, Ying Liu7, Jinsheng Guo8, Guangwen Cao9, Long Yu1,12.   

Abstract

Recent genome-wide associated studies (GWASs) have revealed several common loci associated with the risk of hepatitis B virus (HBV)- or hepatitis C virus (HCV)-related hepatocellular carcinoma (HCC). We selected 15 single nucleotide polymorphisms (SNPs) identified through GWASs on HBV- or HCV-related HCC, and genotyped them in two independent Chinese cohorts of chronic HBV carriers, including 712 LC cases and 2601 controls. The association of each SNP with the risk of HBV-related LC was assessed by meta-analysis of the two cohorts. Of the 12 SNPs reported in HBV-related HCC GWASs, five SNPs (rs7574865 in STAT4, rs9267673 near C2, rs2647073 and rs3997872 near HLA-DRB1 and rs9275319 near HLA-DQ), were found to be significantly associated with the risk of HBV-related LC (rs7574865: P = 1.79 × 10(-2), OR = 1.17, 95% CI = 1.03-1.34; rs9267673: P = 4.91 × 10(-4), OR = 1.37, 95% CI = 1.15-1.63; rs2647073: P = 3.53 × 10(-5), OR = 1.63, 95% CI = 1.29-2.06; rs3997872: P = 4.22 × 10(-4), OR = 1.86, 95% CI = 1.32-2.62; rs9275319: P = 1.30 × 10(-2), OR = 1.32, 95% CI = 1.06-1.64). However, among the three SNPs associated with the risk of HCV-related HCC in previous GWASs, none of them showed significant association with the risk of HBV-related LC. Our results suggested that genetic variants associated with HBV-related hepatocarcinogenesis may already play an important role in the progression from CHB to LC.

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Year:  2015        PMID: 26538132      PMCID: PMC4633722          DOI: 10.1038/srep16278

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


Hepatitis B virus (HBV) infection is one of the most serious and prevalent health problems worldwide, with endemic areas in Sub-Saharan Africa and Southeast Asia, especially China1. It was estimated that approximately one-third of the world’s population show serological evidence of current or past HBV infection1. Partial of the HBV infected person will develop persistent HBV infection, and the risk of persistence is correlated closely with the patient’s age at the time of infection. Roughly 95% of neonates, 20–30% of children (aged 1–5 years) and less than 5% of adults will develop chronic hepatitis B (CHB) after HBV infection1. Although highly effective vaccines against HBV have been available since 1982, there are still more than 350 million CHB carriers worldwide12. In the course of persistent HBV infection, inflammation forms the pathogenetic basis of CHB that can lead to nodular fibrosis, which can sequentially progress to liver cirrhosis (LC) and, eventually, hepatocellular carcinoma (HCC)12. During a 5-year period, 10–20% of patients with CHB will develop LC3. Most cases of HBV-related HCC (70%–80%) occur in patients with HBV-related LC4, and the 5-year cumulative incidence of HCC in patients with HBV-related LC is 15% in high endemic areas and 10% in the West5. The risk of development from CHB to LC as well as HCC has been attributed to various factors, including viral, environmental and host genetic factors6. During the last several decades, an increasing number of molecular genetic association studies have revealed a number of genetic predispositions associated with risk of HBV-related LC and HCC7. With the recent advances in high-density single nucleotide polymorphism (SNP) genotyping arrays and statistical methodology, genome-wide association study (GWAS) has heralded a new era of gene-discovery for complex diseases8. To date, there have been several GWASs on HBV-related HCC910111213, including one GWAS by our group13. However, most of these studies focused on HCC at one time point, which might encompass the progression from CHB to LC14, and did not address the question of whether these genetic factors are involved in the progress from CHB to HBV-related LC. In addition, two GWASs on hepatitis C virus (HCV)-related HCC have also been carried out and revealed several genetic variants associated with the risk of HCV-related HCC, but they did not report if these variants are also involved in the course of HBV induced diseases1516. In the present study, we investigated the associations of genetic variants discovered by HBV- and HCV-related HCC GWASs with the risk of the progression from CHB to LC in Chinese population.

Results

Table 1 illustrates the distribution of the values of the main demographic variables of the 3313 participants enrolled in this study. For both of the two cohorts recruited from Shanghai and Beijing, major of the cases and controls were male. The mean age of the cases and controls were 49.53 and 51.00, respectively, in Shanghai cohort, as well as 48.19 and 42.73, respectively, in Beijing cohort.
Table 1

Demographic characteristics of subjects analyzed in the study.

SubjectsNumberGender, n (%)
Age, years
FemaleMaleMean (SD)≤50, n (%)>50, n (%)
Shanghai cohorta
 Cases440109 (24.77)331 (75.23)49.53 (10.94)249 (56.59)191 (43.41)
 Controls1265464 (36.68)801 (63.32)51.00 (12.89)536 (42.47)729 (57.63)
Beijing cohortb
 Cases27265 (23.90)207 (76.10)48.19 (12.30)160 (58.82)112 (41.18)
 Controls1336491 (36.75)845 (63.25)42.73 (15.04)947 (70.88)389 (29.12)

aRecruited from Shanghai in eastern China.

bRecruited from Beijing in northern China.

A total of 17 SNPs, i.e. rs17401966, rs7574865, rs12682266, rs7821974, rs2275959, rs1573266, rs4678680, rs9267673, rs2647073, rs3997872, rs9272105, rs9275319, rs12663434, rs7749730, rs9444730, rs12100561, and rs455804 were selected from five published GWASs on HBV-related HCC, including our own GWAS paper13, as well as rs2596542, rs9275572 and rs1012068 selected from two published GWASs on HCV-related HCC1516. Among them, rs12682266, rs7821974, rs2275959 and rs1573266 at chromosome 8 as well as rs12663434, rs7749730 and rs9444730 at chromosome 6 were in strong linkage disequilibrium (LD) (data not shown). Thus we only selected rs12682266 and rs7749730 respectively, which were relatively shown more evidence of association with the risk of HBV-related HCC in our GWAS data (Supplementary Table S1), for further analysis. Characteristic information of the genotyped SNPs regarding chromosome location, related genes, relative distances to genes, base changes, risk alleles as well as risk allele frequencies in Chinese Han in Beijing from HapMap are presented in Table 2. All the SNPs located in non-protein-coding regions or even outside of genes with minor allele frequency (MAF) >0.05 in Chinese Han population except for rs4678680 (MAF = 0.037) and rs3997872 (MAF = 0.037). All the SNPs were in Hardy-Weinberg equilibrium (HWE) (P > 0.05) both in cases and controls among Shanghai and Beijing populations (Supplementary Table S2).
Table 2

Information of the SNPs previously reported to be associated with the risk of HBV- and HCV-related HCC by GWASs.

Chr.Related geneDistance to genePositionSNPAlleleaRisk allelebRAF in CHBRef.
1KIF1BIntron 2410308058rs17401966G/AA0.73310
2STAT4Intron 3191672878rs7574865T/GG0.65013
3GLB118 kb upstream32995039rs4678680G/TG0.0379
6C212 kb upstream31991658rs9267673T/CT0.1599
6HLA-DRB116 kb downstream32681992rs2647073C/AC0.0989
6HLA-DRB123 kb downstream32688595rs3997872A/TA0.0379
6HLA-DQA1/DRB196kb downstream of HLA-DQA132707977rs9272105G/AA0.52412
6HLA-DQ42 kb downstream of HLA-DQB232774273rs9275319G/AA0.783c13
6BACH2Intron 590791705rs7749730G/AA0.8909
837548149rs12682266A/GG0.48811
14C14orf143Intron 589370788rs12100561A/GA0.3669
21GRIK1Intron 130068040rs455804A/CC0.68312
6MICA4.7 kb upstream31474574rs2596542T/CT0.25615
6HLA-DQA2Intron 132786977rs9275572A/GA0.31715
22DEPDC5Intron 3230595903rs1012068G/TG0.13416

Chr. chromosome; RAF, risk allele frequency; CHB, Chinese Han in Beijing from in HapMap.

aMinor allele/major allele.

bRisk allele means the allele associated with increased risk of HBV-related HCC in the original GWAS.

CAllele frequency in CHB+JPT in HapMap.

The results of the association study for each SNP selected from HBV-related HCC susceptibility GWAS with the risk of progression from CHB to LC are shown in Table 3. Of the 12 SNPs analyzed, five SNPs, i.e., rs7574865 in signal transducer and activator of transcription 4 (STAT4), rs9267673 near complement component 2 (C2), rs2647073 and rs3997872 near human leukocyte antigen (HLA)-DRB1 and rs9275319 near HLA-DQ were significantly associated with the risk of progression from CHB to LC (rs7574865: P = 1.79 × 10−2, OR = 1.17, 95% CI = 1.03–1.34; rs9267673: P = 4.91 × 10−4, OR = 1.37, 95% CI = 1.15–1.63; rs2647073: P = 3.53 × 10−5, OR = 1.63, 95% CI = 1.29–2.06; rs3997872: P = 4.22 × 10−4, OR = 1.86, 95% CI = 1.32–2.62; rs9275319: P = 1.30 × 10−2, OR = 1.32, 95% CI = 1.06–1.64). After false discovery rate (FDR) correction for multiple testing, associations between the five SNPs and risk of LC were still significant (P < 0.05). As for the other SNPs, no significant differences of allele frequencies were identified between the case and control groups. We found no evidence for heterogeneity of ORs for these 12 SNPs among these two populations (test for heterogeneity P > 0.05 for all SNPs).
Table 3

Results of association between SNPs previously reported by HBV-related HCC GWAS and the risk of progression from CHB to LC.

GeneSNPAlleleaRAFb of Shanghai cohort
RAFb of Beijing cohort
ORmeta (95% CI)c,dPmetacPmeta-AdjustedePhet.
CasesControlsCasesControls
KIF1Brs17401966G/A0.330.290.280.281.13 (0.99–1.30)8.03 × 10−21.64 × 10−10.522
STAT4rs7574865T/G0.720.670.720.691.17 (1.03–1.34)1.79 × 10−24.18 × 10−20.894
GLB1rs4678680G/T0.940.930.920.931.13 (0.87–1.47)3.45 × 10−14.57 × 10−10.958
C2rs9267673T/C0.170.120.130.121.37 (1.15–1.63)4.91 × 10−41.74 × 10−30.680
HLA-DRB1rs2647073C/A0.090.050.100.081.63 (1.29–2.06)3.53 × 10−53.75 × 10−40.886
HLA-DRB1rs3997872A/T0.970.940.970.951.86 (1.32–2.62)4.22 × 10−41.66 × 10−30.997
HLA-DQA1/DRB1rs9272105A/G0.430.410.420.391.07 (0.95–1.20)2.59 × 10−13.87 × 10−10.981
HLA-DQrs9275319G/A0.910.890.930.901.32 (1.06–1.64)1.30 × 10−23.36 × 10−20.989
BACH2rs7749730G/A0.170.150.150.171.06 (0.89–1.26)5.14 × 10−15.56 × 10−10.387
rs12682266A/G0.500.500.470.461.01 (0.89–1.14)8.97 × 10−16.86 × 10−11.000
C14orf143rs12100561A/G0.410.400.390.411.00 (0.88–1.14)9.42 × 10−16.96 × 10−10.952
GRIK1rs455804A/C0.330.320.290.321.00 (0.87–1.15)9.88 × 10−17.06 × 10−10.831

RAF, risk allele frequency; OR, odds ratio; CI, confidence interval.

aMinor allele/major allele.

bRAF means the allele frequency of cases is lower than that of controls in the Shanghai cohort or both of the two cohorts.

cThe data was analyzed by meta-analysis using the fixed-effects model (the Mantel-Haenszel model) based on the association results, which were generated by logistic regression analysis under an additive model adjusting for gender and age in the two cohorts.

dThe ORs and 95%CIs were calculated by considering the non-risk allele as a reference.

eFalse discovery rate (FDR) correction for multiple testing.

Interestingly, at three of the five significant SNPs, i.e., rs7574865, rs9267673 and rs9275319, the directions of the associations were consistent with those from the analyses of the risk of HBV-related HCC in our previous GWAS data (Supplementary Table S1), although rs9267673 didn’t reach the significant level. Unfortunately, we were unable to analyze the association of the other two SNPs with the risk of HBV-related HCC for lack of their allele frequencies in our GWAS data. Similarly, rs9272105 significantly associated with the risk of HBV-related HCC in our GWAS data also showed the same direction of effect in the progression from CHB to LC, though its association with the risk of HBV-related LC didn’t reach significant level (Table 3). We further examined the associations between SNPs selected from HCV-related HCC susceptibility GWAS and the risk of HBV-related LC. No evidence of significant associations for any of these SNPs was observed. Nevertheless, it’s worth noting that one SNP near HLA-DQA2 (rs9275572) showing a significant association (P = 0.02, OR = 0.84, 95% CI = 1.32–2.62) with the risk of HBV-related HCC (Supplementary Table S1) exhibited an opposite direction of effect in the progression from CHB to LC (P = 0.6, OR = 1.04, 95% CI = 0.90-1.20) (Table 4). We did not observe evidence for heterogeneity between studies at any of the three loci (test for heterogeneity P  > 0.05 for all SNPs).
Table 4

Results of association between SNPs previously reported by HCV-related HCC GWAS and the risk of progression from CHB to LC.

GeneSNPAlleleaRAFb of Shanghai cohort
RAFb of Beijing cohort
ORmeta (95%CI)c,dPmetacPmeta-AdjustedePhet.
CasesControlsCasesControls
MICArs2596542T/C0.300.280.290.251.10 (0.96–1.26)1.65 × 10−12.87 × 10−10.999
HLA-DQA2rs9275572A/G0.240.240.260.241.04 (0.90–1.20)6.14 × 10−15.99 × 10−10.998
DEPDC5rs1012068G/T0.250.240.240.240.99 (0.85–1.14)8.64 × 10−16.78 × 10−10.945

RAF, risk allele frequency; OR, odds ratio; CI, confidence interval.

aMinor allele/major allele.

bRAF means the allele frequency of cases is lower than that of controls in the Shanghai cohort or both of the two cohorts.

cThe data was analyzed by meta-analysis using the fixed-effects model (the Mantel-Haenszel model) based on the association results, which were generated by logistic regression analysis under an additive model adjusting for gender and age in the two cohorts.

dThe ORs and 95%CIs were calculated by considering the non-risk allele as a reference.

eFalse discovery rate (FDR) correction for multiple testing.

In order to assess if subjects with more risk alleles of the five LC risk-associated SNPs are more likely to develop LC, we performed cumulative effect analysis. We found a gradual increase in OR with a greater number of hazard alleles. That is, compared with individuals carrying less than or equal to 3 risk alleles, individuals carrying 4, 5, 6, 7, 8, and more than or equal to 9 risk alleles had an adjusted OR of 1.46 (95% CI, 0.81–2.63, P = 0.21), 1.84 (95% CI, 1.05–3.22, P = 0.03), 2.29 (95% CI, 1.32–3.97, P = 3.39 × 10−3), 2.23 (95% CI, 1.22–4.08, P = 9.32 × 10−3), 3.27 (95% CI, 1.67–6.39, P = 5.40 × 10−4), 6.69 (95% CI, 2.46–18.17, P = 1.91 × 10−4), respectively, Ptrend = 2.57 × 10−6 (Fig. 1).
Figure 1

Plot of the increasing crude ORs for hepatitis B virus-related liver cirrhosis with increasing number of risk alleles.

The vertical bars represent the 95% confidence intervals.

Discussion

Chronic infection with the HBV is associated with an increased risk of LC and HCC. Host genetic factors are widely viewed as the common basis of the different outcomes of HBV infection1718. In the present study, we examined the association of fifteen SNPs derived from seven GWASs on susceptibility of HBV- or HCV-related HCC with the risk of HBV-related LC in the Chinese population, and found that rs7574865 in STAT4, rs9267673 near C2, rs2647073 and rs3997872 near HLA-DRB1 and rs9275319 near HLA-DQ, were significantly associated with the risk of HBV-related LC. LC is an increasing cause of morbidity and mortality, responsible for more than one million deaths every year419. In developed countries, HCV, alcohol misuse and nonalcoholic liver disease are the most common cause of LC; whereas the leading causes in sub-Saharan Africa and most parts of Asia is HBV45. To date, several molecular genetic studies have implicated a number of genetic variants in hepatitis-related LC including two GWASs, each of which revealed two independent susceptibility loci for LC2021. However, both of the two GWASs were performed in LC patients developed from chronic hepatitis C. Till present, no GWAS has been conducted to systematically identify genetic variants associated with HBV-related LC. Only one candidate gene-based association study demonstrated a statistical association of rs430397, located in the intron 5 of glucose-regulated protein 78 (GRP78), with HBV-related LC22. In our study, rs7574865, which was located in the third intron of STAT4, was significantly associated with the risk of progression to LCs in patients with CHB. STAT4 is a transcription factor belonging to STAT family23, important members of Janus Kinase (JAK)-STAT pathway, that is required for the development of Th1 cells from naïve CD4+ T cells24 and interferon-γ (IFN-γ) production in response to interleukin-12 (IL12)25 and type I interferon (IFN-α or IFN-β)26. In addition to the association of this gene with HBV-related LC and HCC in our own studies, it has been reported that genetic polymorphisms of this gene, especially the rs7574865, are also associated with numerous autoimmune diseases2728, indicating a crucial role in the immune system. Interestingly, during fibrosis progression, immune cells secret a variety of growth factors and inflammatory cytokines including IL-6, IFN-γ, IFN-α/β, and IL-22, which have been shown to play key roles in regulating liver fibrogenesis resulting in collagen deposition and the disruption of the normal liver architecture2930. In addition, rs7574865 has been shown to influence the mRNA level of STAT4 in our published HBV-related HCC GWAS13. These previous findings enhance the biological plausibility that this SNP in STAT4 may play an important role in the liver fibrosis progression, although the molecular mechanism remains uncertain and further functional studies are required. The rest of four HBV-related LC risk-related SNPs (rs9267673, rs264707, rs3997872 and rs9275319) were all located in molecules that belong to the HLA class II, which has been considered to be the most important host factors with respect to outcomes of HBV and HCV infections. Among them, rs9267673, rs2647073 and rs3997872 were already shown to be associated with LC in the initial GWAS study9. HLA system is the most important region in the human genome related to infection, inflammation, autoimmunity, and transplantation medicine31. Interactions among HLA-restricted T lymphocytes, B lymphocytes, natural killer cells, and cytokines influence immune response to viral infection. Increasing numbers of case-control association studies and GWASs have demonstrated that several variants in HLA class II region were associated with persistent HBV infection as well as HCC progression in patients with HBV323334. Given the significant association between HLA region and outcome of HBV infection in previous studies, together with our robust statistic results, it is natural to speculate that polymorphisms in such region may also associated with the progression to LC in patients with CHB. Unfortunately, we observed no significant evidence of association between SNPs identified by HCV-related HCC GWAS and the risk of HBV-related LC, which also failed to be replicated in our own HBV-related HCC GWAS population. The main reason for this result might be the difference between these two viruses. Although there is certain similarity in clinical manifestations of hepatitis induced by these viruses and creating background for subsequent development for LC and HCC, their molecular organization, replication strategy and functions of constituent proteins are different. In addition, HCV increases the risk for HCC by inducing fibrosis and, eventually, cirrhosis; while HBV can cause HCC in the absence of cirrhosis. Thus, different mechanisms of liver fibrogenesis and carcinogenesis might operate in HBV- and HCV-related chronic inflammation. In summary, we explored the association of GWAS-identified HBV- and HCV-related susceptibility SNPs with the progression from CHB to LC in two independent cohorts of Chinese population. Our study confirms that five of these SNPs (rs7574865 in STAT4, rs9267673 near C2, rs2647073 and rs3997872 near HLA-DRB1 and rs9275319 near HLA-DQ) also affect individual susceptibility to HBV-related LC. Thus, these findings provide new insights into the etiology of LC.

Materials and Methods

Study population

In this study, two independent case-control cohorts including 440 HBV-related LC cases and 1265 HBV positive controls from eastern China (Shanghai) as well as 272 cases and 1336 controls from northern China (Beijing) were recruited (Table 1). All participants were genetically unrelated ethnic Han Chinese. All the LC patients were diagnosed by pathologic exams, laboratory features, and the findings of computed tomography (CT) or ultrasonography based on the following criteria: thrombocytopenia (<150,000 platelets per μL), cirrhotic configuration of the liver (nodular liver surface or caudate lobe hypertrophy) and/or splenomegaly confirmed in imaging studies, or the presence of varices (abnormally enlarged veins, detected by upper endoscopy or cross-sectional images). Both of cases and controls were CHB carriers that were positive for both HBV surface antigen and immunoglobulin G antibody to HBV core antigen for at least 6 months. All subjects in this study were negative for antibodies to HCV, hepatitis D virus, or human immunodeficiency virus; and had no other types of liver disease, such as autoimmune hepatitis, toxic hepatitis, alcoholism-related cirrhosis and HCC. The study was performed in accordance with approved guidelines and was approved by the Department of Scientific Research of Fudan University and local ethical committees from all the participating centers. An informed consent to participate in the study was obtained from each subject, in accordance with the declaration of Helsinki principles. All study participants approved the storage of their frozen DNA specimens, for research purposes, in our laboratory.

SNP selection and genotyping

We used the NHGRI GWAS Catalog (http://www.genome.gov/26525384) to search for SNPs identified by the published HBV- and HCV-related HCC susceptibility GWAS. Additionally, we searched PubMed for reports of HBV- and HCV-related HCC susceptibility loci published in English before November 20, 2014. We used a combination of the search terms “genome wide association study” and “hepatitis B virus” or “hepatitis C virus” and “hepatocellular carcinoma”. We identified five HBV-related HCC GWASs and two HCV-related HCC GWASs, which revealed 12 independent HBV-related HCC susceptibility loci and 3 HCV-related HCC susceptibility loci. Information of these SNPs were extracted from original articles or searched in the SNP database on National Center for Biotechnology Information. Genotyping analysis for all SNPs were conducted using the Sequenom MassARRAY multiplex genotyping platform (Sequenom) at the Fudan-VARI laboratory and TaqMan assays at the State Key Laboratory of Genetic Engineering, Fudan University, according to the manufacturers’ instructions. Primers and TaqMan MGB probes were purchased from Life Technologies (Foster City, CA). Several quality-control measures implemented in genotyping analysis are as follows: duplicate test samples were mixed in the plates; two water samples (PCR negative controls) were included in each 96-well plate; and persons performing the genotyping assays were blinded to the identity of the samples. The concordance rates for quality-control samples were >99% for all assays.

Statistical analysis

Continuous variables were presented as mean ± standard deviation while categorical variables were expressed as frequencies (%). HWE tests of all the genotyped SNPs in cases, controls and all samples were performed using chi-square test. LD was assessed using Haploview 4.2 software by determining D’ and r2 values. The associations of SNPs with the risk of progression from CHB to LC or HBV-related HCC were estimated by computing the odds ratios (ORs) and their 95% confidence intervals (CIs) from logistic regression analysis under an additive model adjusting for gender and age using PLINK (v1.07). A Cochrane chi-square-based Q-test was performed to test the heterogeneity among studies or cohorts. Meta-analysis was performed based on the association results using the fixed-effects model (Mantel-Haenszel model) if the result of the heterogeneity test showed Phet ≥ 0.05 or using the random-effects model (DerSimonian and Laird model) if Phet < 0.05. We performed FDR correction for multiple testing using R software. The cutoff for significant association after FDR correction for multiple testing was set at P value <0.05. All statistical tests were two sided. We also tested the cumulative effects of the five significant SNPs by counting the number of risk alleles associated with LC risk in each subject. The OR for those carrying any combination of 4, 5, 6, 7, 8 or more than or equal to 9 risk alleles was estimated by comparing them with those carrying less than or equal to 3 risk alleles with the logistic regression analysis adjusting age and gender.

Additional Information

How to cite this article: Jiang, D.-K. et al. Genetic variations in STAT4, C2, HLA-DRB1 and HLA-DQ associated with risk of hepatitis B virus-related liver cirrhosis. Sci. Rep. 5, 16278; doi: 10.1038/srep16278 (2015).
  33 in total

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Authors:  Christian Trépo; Henry L Y Chan; Anna Lok
Journal:  Lancet       Date:  2014-06-18       Impact factor: 79.321

Review 3.  Single nucleotide polymorphisms and risk of hepatocellular carcinoma in cirrhosis.

Authors:  Pierre Nahon; Jessica Zucman-Rossi
Journal:  J Hepatol       Date:  2012-05-16       Impact factor: 25.083

4.  A genome-wide association study of hepatitis B vaccine response in an Indonesian population reveals multiple independent risk variants in the HLA region.

Authors:  Eileen Png; Anbupalam Thalamuthu; Rick T H Ong; Harm Snippe; Greet J Boland; Mark Seielstad
Journal:  Hum Mol Genet       Date:  2011-07-15       Impact factor: 6.150

5.  A genome-wide association study of HCV-induced liver cirrhosis in the Japanese population identifies novel susceptibility loci at the MHC region.

Authors:  Yuji Urabe; Hidenori Ochi; Naoya Kato; Vinod Kumar; Atsushi Takahashi; Ryosuke Muroyama; Naoya Hosono; Motoyuki Otsuka; Ryosuke Tateishi; Paulisally Hau Yi Lo; Chizu Tanikawa; Masao Omata; Kazuhiko Koike; Daiki Miki; Hiromi Abe; Naoyuki Kamatani; Joji Toyota; Hiromitsu Kumada; Michiaki Kubo; Kazuaki Chayama; Yusuke Nakamura; Koichi Matsuda
Journal:  J Hepatol       Date:  2013-01-12       Impact factor: 25.083

6.  Critical role for STAT4 activation by type 1 interferons in the interferon-gamma response to viral infection.

Authors:  Khuong B Nguyen; Wendy T Watford; Rachelle Salomon; Sigrun R Hofmann; Gary C Pien; Akio Morinobu; Massimo Gadina; John J O'Shea; Christine A Biron
Journal:  Science       Date:  2002-09-20       Impact factor: 47.728

7.  Genome-wide association study identifies variants associated with progression of liver fibrosis from HCV infection.

Authors:  Etienne Patin; Zoltán Kutalik; Julien Guergnon; Stéphanie Bibert; Bertrand Nalpas; Emmanuelle Jouanguy; Mona Munteanu; Laurence Bousquet; Laurent Argiro; Philippe Halfon; Anne Boland; Beat Müllhaupt; David Semela; Jean-François Dufour; Markus H Heim; Darius Moradpour; Andreas Cerny; Raffaele Malinverni; Hans Hirsch; Gladys Martinetti; Vijayaprakash Suppiah; Graeme Stewart; David R Booth; Jacob George; Jean-Laurent Casanova; Christian Bréchot; Charles M Rice; Andrew H Talal; Ira M Jacobson; Marc Bourlière; Ioannis Theodorou; Thierry Poynard; Francesco Negro; Stanislas Pol; Pierre-Yves Bochud; Laurent Abel
Journal:  Gastroenterology       Date:  2012-07-27       Impact factor: 22.682

8.  Genetic variants in STAT4 and HLA-DQ genes confer risk of hepatitis B virus-related hepatocellular carcinoma.

Authors:  De-Ke Jiang; Jielin Sun; Guangwen Cao; Yao Liu; Dongxin Lin; Yu-Zhen Gao; Wei-Hua Ren; Xi-Dai Long; Hongxing Zhang; Xiao-Pin Ma; Zhong Wang; Wei Jiang; Tao-Yang Chen; Yong Gao; Liang-Dan Sun; Ji-Rong Long; Hui-Xing Huang; Dan Wang; Hongjie Yu; Pengyin Zhang; Li-Sha Tang; Bo Peng; Hao Cai; Ting-Ting Liu; Ping Zhou; Fang Liu; Xiaoling Lin; Sha Tao; Bo Wan; He-Xi Ge Sai-Yin; Lun-Xiu Qin; Jianhua Yin; Li Liu; Chen Wu; Yan Pei; Yuan-Feng Zhou; Yun Zhai; Pei-Xin Lu; Aihua Tan; Xian-Bo Zuo; Jia Fan; Jiang Chang; Xiaoli Gu; Neng-Jin Wang; Yang Li; Yin-Kun Liu; Kan Zhai; Hongwei Zhang; Zhibin Hu; Jun Liu; Qing Yi; Yongbing Xiang; Rong Shi; Qiang Ding; Wei Zheng; Xiao-Ou Shu; Zengnan Mo; Yin Yao Shugart; Xue-Jun Zhang; Gangqiao Zhou; Hongbing Shen; S Lilly Zheng; Jianfeng Xu; Long Yu
Journal:  Nat Genet       Date:  2012-12-16       Impact factor: 38.330

9.  Genome-wide association study of hepatocellular carcinoma in Southern Chinese patients with chronic hepatitis B virus infection.

Authors:  Kelvin Yuen-Kwong Chan; Chun-Ming Wong; Johnny Sheung-Him Kwan; Joyce Man-Fong Lee; Ka Wai Cheung; Man Fung Yuen; Ching Lung Lai; Ronnie Tung-Ping Poon; Pak Chung Sham; Irene Oi-Lin Ng
Journal:  PLoS One       Date:  2011-12-08       Impact factor: 3.240

10.  GWAS identifies novel susceptibility loci on 6p21.32 and 21q21.3 for hepatocellular carcinoma in chronic hepatitis B virus carriers.

Authors:  Shengping Li; Ji Qian; Yuan Yang; Wanting Zhao; Juncheng Dai; Jin-Xin Bei; Jia Nee Foo; Paul J McLaren; Zhiqiang Li; Jingmin Yang; Feng Shen; Li Liu; Jiamei Yang; Shuhong Li; Shandong Pan; Yi Wang; Wenjin Li; Xiangjun Zhai; Boping Zhou; Lehua Shi; Xinchun Chen; Minjie Chu; Yiqun Yan; Jun Wang; Shuqun Cheng; Jiawei Shen; Weihua Jia; Jibin Liu; Jiahe Yang; Zujia Wen; Aijun Li; Ying Zhang; Guoliang Zhang; Xianrong Luo; Hongbo Qin; Minshan Chen; Hua Wang; Li Jin; Dongxin Lin; Hongbing Shen; Lin He; Paul I W de Bakker; Hongyang Wang; Yi-Xin Zeng; Mengchao Wu; Zhibin Hu; Yongyong Shi; Jianjun Liu; Weiping Zhou
Journal:  PLoS Genet       Date:  2012-07-12       Impact factor: 5.917

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  19 in total

Review 1.  The HLA-DRB1 allele polymorphisms and nasopharyngeal carcinoma.

Authors:  Huimin Yang; Kaihui Yu; Ruoheng Zhang; Jiatong Li; Xiaomou Wei; Yuening Zhang; Chengdong Zhang; Feifan Xiao; Dong Zhao; Xuandong Lin; Huayu Wu; Xiaoli Yang
Journal:  Tumour Biol       Date:  2016-04-08

Review 2.  Human Genetic Determinants of Viral Diseases.

Authors:  Adam D Kenney; James A Dowdle; Leonia Bozzacco; Temet M McMichael; Corine St Gelais; Amanda R Panfil; Yan Sun; Larry S Schlesinger; Matthew Z Anderson; Patrick L Green; Carolina B López; Brad R Rosenberg; Li Wu; Jacob S Yount
Journal:  Annu Rev Genet       Date:  2017-08-30       Impact factor: 16.830

3.  Genetic variants that associate with cirrhosis have pleiotropic effects on human traits.

Authors:  Vincent L Chen; Yanhua Chen; Xiaomeng Du; Samuel K Handelman; Elizabeth K Speliotes
Journal:  Liver Int       Date:  2020-01-01       Impact factor: 5.828

Review 4.  Omics-derived hepatocellular carcinoma risk biomarkers for precision care of chronic liver diseases.

Authors:  Naoto Fujiwara; Tongqi Qian; Bhuvaneswari Koneru; Yujin Hoshida
Journal:  Hepatol Res       Date:  2020-05-15       Impact factor: 4.942

Review 5.  Clinical Relevance of HLA Gene Variants in HBV Infection.

Authors:  Li Wang; Zhi-Qiang Zou; Kai Wang
Journal:  J Immunol Res       Date:  2016-05-08       Impact factor: 4.818

6.  Quantitative assessment of HLA-DQ gene polymorphisms with the development of hepatitis B virus infection, clearance, liver cirrhosis, and hepatocellular carcinoma.

Authors:  Tao Xu; Anyou Zhu; Meiqun Sun; Jingzhu Lv; Zhongqing Qian; Xiaojing Wang; Ting Wang; Hongtao Wang
Journal:  Oncotarget       Date:  2017-12-05

7.  Genetic susceptibility of eight nonsynonymous polymorphisms in HLA-DRB1 gene to hepatocellular carcinoma in Han Chinese.

Authors:  Yanhui Shi; Weiyu Zhai; Bin Wang; Dongmei Zhao; He Jin; Yuefei Wang; Jidong Zhang; Hongjun An; Zhongze Fu; Kun Zhao; Changzhu Lu
Journal:  Oncotarget       Date:  2016-12-06

8.  Association Between the Telomerase rs2736098_TT Genotype and a Lower Risk of Chronic Hepatitis B and Cirrhosis in Chinese Males.

Authors:  Guanghui Cheng; Xiaotian Yuan; Fang Wang; Qing Sun; Qian Xin; Kailin Li; Chao Sun; Zhaomin Lin; Yun Luan; Yiteng Xu; Ping Li; Feng Kong; Dawei Xu
Journal:  Clin Transl Gastroenterol       Date:  2017-03-16       Impact factor: 4.488

9.  TFCP2 Genetic Polymorphism Is Associated with Predisposition to and Transplant Prognosis of Hepatocellular Carcinoma.

Authors:  Zhikun Liu; Feng Gao; Zhou Shao; Haiyang Xie; Lin Zhou; Xiao Xu; Shusen Zheng
Journal:  Gastroenterol Res Pract       Date:  2017-02-27       Impact factor: 2.260

10.  Clinical significance of SNP (rs2596542) in histocompatibility complex class I-related gene A promoter region among hepatitis C virus related hepatocellular carcinoma cases.

Authors:  Amal A Mohamed; Ola M Elsaid; Eman A Amer; Heba H Elosaily; Mohamed I Sleem; Shawkat S Gerges; Mohamed A Saleh; Amal El Shimy; Yasmine S El Abd
Journal:  J Adv Res       Date:  2017-03-18       Impact factor: 10.479

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