Literature DB >> 26537758

A course-based undergraduate research experience investigating p300 bromodomain mutations.

Erin K Shanle1,2, Ian K Tsun1, Brian D Strahl1.   

Abstract

Course-based undergraduate research experiences (CUREs) provide an opportunity for students to engage in experiments with outcomes that are unknown to both the instructor and students. These experiences allow students and instructors to collaboratively bridge the research laboratory and classroom, and provide research experiences for a large number of students relative to traditional individual mentored research. Here, we describe a molecular biology CURE investigating the impact of clinically relevant mutations found in the bromodomain of the p300 transcriptional regulator on acetylated histone interaction. In the CURE, students identified missense mutations in the p300 bromodomain using the Catalogue of Somatic Mutations in Cancer (COSMIC) database and hypothesized the effects of the mutation on the acetyl-binding function of the domain. They cloned and purified the mutated bromodomain and performed peptide pulldown assays to define its potential to bind to acetylated histones. Upon completion of the course, students showed increased confidence performing molecular techniques and reported positively on doing a research project in class. In addition, results generated in the classroom were further validated in the research laboratory setting thereby providing a new model for faculty to engage in both course-based and individual undergraduate research experiences.
© 2015 The International Union of Biochemistry and Molecular Biology.

Entities:  

Keywords:  bromodomain; course-based undergraduate research experience; peptide pulldown assay; protein purification

Mesh:

Substances:

Year:  2015        PMID: 26537758      PMCID: PMC4982466          DOI: 10.1002/bmb.20927

Source DB:  PubMed          Journal:  Biochem Mol Biol Educ        ISSN: 1470-8175            Impact factor:   1.160


  24 in total

1.  Structure of the p300 catalytic core and implications for chromatin targeting and HAT regulation.

Authors:  Manuela Delvecchio; Jonathan Gaucher; Carmen Aguilar-Gurrieri; Esther Ortega; Daniel Panne
Journal:  Nat Struct Mol Biol       Date:  2013-08-11       Impact factor: 15.369

2.  The transcriptional coactivators p300 and CBP are histone acetyltransferases.

Authors:  V V Ogryzko; R L Schiltz; V Russanova; B H Howard; Y Nakatani
Journal:  Cell       Date:  1996-11-29       Impact factor: 41.582

Review 3.  Quantitative proteomic analysis of histone modifications.

Authors:  He Huang; Shu Lin; Benjamin A Garcia; Yingming Zhao
Journal:  Chem Rev       Date:  2015-02-17       Impact factor: 60.622

4.  Validation of histone-binding partners by peptide pull-downs and isothermal titration calorimetry.

Authors:  Kathryn Malecek; Alexander Ruthenburg
Journal:  Methods Enzymol       Date:  2012       Impact factor: 1.600

5.  IBI* series winner. Integrating inquiry-based teaching with faculty research.

Authors:  Tadashi Fukami
Journal:  Science       Date:  2013-03-29       Impact factor: 47.728

6.  Biochemical analysis of distinct activation functions in p300 that enhance transcription initiation with chromatin templates.

Authors:  W L Kraus; E T Manning; J T Kadonaga
Journal:  Mol Cell Biol       Date:  1999-12       Impact factor: 4.272

7.  A novel mutation lacking the bromodomain of the transcriptional coactivator p300 in the SiHa cervical carcinoma cell line.

Authors:  T Ohshima; T Suganuma; M Ikeda
Journal:  Biochem Biophys Res Commun       Date:  2001-02-23       Impact factor: 3.575

8.  COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer.

Authors:  Simon A Forbes; Nidhi Bindal; Sally Bamford; Charlotte Cole; Chai Yin Kok; David Beare; Mingming Jia; Rebecca Shepherd; Kenric Leung; Andrew Menzies; Jon W Teague; Peter J Campbell; Michael R Stratton; P Andrew Futreal
Journal:  Nucleic Acids Res       Date:  2010-10-15       Impact factor: 16.971

9.  Discovery and saturation analysis of cancer genes across 21 tumour types.

Authors:  Michael S Lawrence; Petar Stojanov; Craig H Mermel; James T Robinson; Levi A Garraway; Todd R Golub; Matthew Meyerson; Stacey B Gabriel; Eric S Lander; Gad Getz
Journal:  Nature       Date:  2014-01-05       Impact factor: 49.962

10.  Assessment of course-based undergraduate research experiences: a meeting report.

Authors:  Lisa Corwin Auchincloss; Sandra L Laursen; Janet L Branchaw; Kevin Eagan; Mark Graham; David I Hanauer; Gwendolyn Lawrie; Colleen M McLinn; Nancy Pelaez; Susan Rowland; Marcy Towns; Nancy M Trautmann; Pratibha Varma-Nelson; Timothy J Weston; Erin L Dolan
Journal:  CBE Life Sci Educ       Date:  2014       Impact factor: 3.325

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  4 in total

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Authors:  C E Oufiero
Journal:  Integr Org Biol       Date:  2019-08-23

2.  Propelling a Course-Based Undergraduate Research Experience Using an Open-Access Online Undergraduate Research Journal.

Authors:  Evelyn Sun; Marcia L Graves; David C Oliver
Journal:  Front Microbiol       Date:  2020-11-23       Impact factor: 5.640

3.  Disparities in Remote Learning Faced by First-Generation and Underrepresented Minority Students during COVID-19: Insights and Opportunities from a Remote Research Experience.

Authors:  Paul H Barber; Casey Shapiro; Molly S Jacobs; Leslie Avilez; Katherine I Brenner; Carmen Cabral; Monika Cebreros; Evan Cosentino; Candice Cross; Monica L Gonzalez; Kaila T Lumada; Alison T Menjivar; Jennifer Narvaez; Belinda Olmeda; Rebecca Phelan; Destiney Purdy; Saima Salam; Leah Serrano; Miguel J Velasco; Erick Zerecero Marin; Marc Levis-Fitzgerald
Journal:  J Microbiol Biol Educ       Date:  2021-03-31

4.  Students' Experiences and Perceptions of the Scientific Research Culture after Participating in Different Course-Based Undergraduate Research Experience Models.

Authors:  Jessica Dewey; Alaina Evers; Anita Schuchardt
Journal:  CBE Life Sci Educ       Date:  2022-06       Impact factor: 3.955

  4 in total

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