Literature DB >> 26526619

Mechanisms of fate decision and lineage commitment during haematopoiesis.

Ana Cvejic1,2,3.   

Abstract

Blood stem cells need to both perpetuate themselves (self-renew) and differentiate into all mature blood cells to maintain blood formation throughout life. However, it is unclear how the underlying gene regulatory network maintains this population of self-renewing and differentiating stem cells and how it accommodates the transition from a stem cell to a mature blood cell. Our current knowledge of transcriptomes of various blood cell types has mainly been advanced by population-level analysis. However, a population of seemingly homogenous blood cells may include many distinct cell types with substantially different transcriptomes and abilities to make diverse fate decisions. Therefore, understanding the cell-intrinsic differences between individual cells is necessary for a deeper understanding of the molecular basis of their behaviour. Here we review recent single-cell studies in the haematopoietic system and their contribution to our understanding of the mechanisms governing cell fate choices and lineage commitment.

Mesh:

Year:  2015        PMID: 26526619     DOI: 10.1038/icb.2015.96

Source DB:  PubMed          Journal:  Immunol Cell Biol        ISSN: 0818-9641            Impact factor:   5.126


  56 in total

1.  Reciprocal activation of GATA-1 and PU.1 marks initial specification of hematopoietic stem cells into myeloerythroid and myelolymphoid lineages.

Authors:  Yojiro Arinobu; Shin-ichi Mizuno; Yong Chong; Hirokazu Shigematsu; Tadafumi Iino; Hiromi Iwasaki; Thomas Graf; Robin Mayfield; Susan Chan; Philippe Kastner; Koichi Akashi
Journal:  Cell Stem Cell       Date:  2007-10-11       Impact factor: 24.633

2.  Flk2+ common lymphoid progenitors possess equivalent differentiation potential for the B and T lineages.

Authors:  Holger Karsunky; Matthew A Inlay; Thomas Serwold; Deepta Bhattacharya; Irving L Weissman
Journal:  Blood       Date:  2008-04-18       Impact factor: 22.113

3.  Single-cell trajectory detection uncovers progression and regulatory coordination in human B cell development.

Authors:  Sean C Bendall; Kara L Davis; El-Ad David Amir; Michelle D Tadmor; Erin F Simonds; Tiffany J Chen; Daniel K Shenfeld; Garry P Nolan; Dana Pe'er
Journal:  Cell       Date:  2014-04-24       Impact factor: 41.582

Review 4.  Hematopoietic stem cell heterogeneity: subtypes, not unpredictable behavior.

Authors:  Timm Schroeder
Journal:  Cell Stem Cell       Date:  2010-03-05       Impact factor: 24.633

Review 5.  Global signatures of protein and mRNA expression levels.

Authors:  Raquel de Sousa Abreu; Luiz O Penalva; Edward M Marcotte; Christine Vogel
Journal:  Mol Biosyst       Date:  2009-10-01

Review 6.  Computational and analytical challenges in single-cell transcriptomics.

Authors:  Oliver Stegle; Sarah A Teichmann; John C Marioni
Journal:  Nat Rev Genet       Date:  2015-01-28       Impact factor: 53.242

7.  Entering the era of single-cell transcriptomics in biology and medicine.

Authors:  Rickard Sandberg
Journal:  Nat Methods       Date:  2014-01       Impact factor: 28.547

8.  Purification and characterization of mouse hematopoietic stem cells.

Authors:  G J Spangrude; S Heimfeld; I L Weissman
Journal:  Science       Date:  1988-07-01       Impact factor: 47.728

Review 9.  Development and applications of single-cell transcriptome analysis.

Authors:  Fuchou Tang; Kaiqin Lao; M Azim Surani
Journal:  Nat Methods       Date:  2011-04       Impact factor: 28.547

10.  The transcriptional landscape of αβ T cell differentiation.

Authors:  Michael Mingueneau; Taras Kreslavsky; Daniel Gray; Tracy Heng; Richard Cruse; Jeffrey Ericson; Sean Bendall; Matthew H Spitzer; Garry P Nolan; Koichi Kobayashi; Harald von Boehmer; Diane Mathis; Christophe Benoist; Adam J Best; Jamie Knell; Ananda Goldrath; Vladimir Joic; Daphne Koller; Tal Shay; Aviv Regev; Nadia Cohen; Patrick Brennan; Michael Brenner; Francis Kim; Tata Nageswara Rao; Amy Wagers; Tracy Heng; Jeffrey Ericson; Katherine Rothamel; Adriana Ortiz-Lopez; Diane Mathis; Christophe Benoist; Natalie A Bezman; Joseph C Sun; Gundula Min-Oo; Charlie C Kim; Lewis L Lanier; Jennifer Miller; Brian Brown; Miriam Merad; Emmanuel L Gautier; Claudia Jakubzick; Gwendalyn J Randolph; Paul Monach; David A Blair; Michael L Dustin; Susan A Shinton; Richard R Hardy; David Laidlaw; Jim Collins; Roi Gazit; Derrick J Rossi; Nidhi Malhotra; Katelyn Sylvia; Joonsoo Kang; Taras Kreslavsky; Anne Fletcher; Kutlu Elpek; Angelique Bellemare-Pelletier; Deepali Malhotra; Shannon Turley
Journal:  Nat Immunol       Date:  2013-05-05       Impact factor: 25.606

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  12 in total

Review 1.  The Ontogeny of a Neutrophil: Mechanisms of Granulopoiesis and Homeostasis.

Authors:  Shelley M Lawrence; Ross Corriden; Victor Nizet
Journal:  Microbiol Mol Biol Rev       Date:  2018-02-07       Impact factor: 11.056

2.  Cutting-edge single-cell genomics and modelling in immunology.

Authors:  Valentina Proserpio; Tapio Lönnberg
Journal:  Immunol Cell Biol       Date:  2016-03       Impact factor: 5.126

3.  Asynchronous lineage priming determines commitment to T cell and B cell lineages in fetal liver.

Authors:  Claire Berthault; Cyrille Ramond; Odile Burlen-Defranoux; Guillaume Soubigou; Sylvestre Chea; Rachel Golub; Pablo Pereira; Paulo Vieira; Ana Cumano
Journal:  Nat Immunol       Date:  2017-08-21       Impact factor: 25.606

4.  Stochastic multistationarity in a model of the hematopoietic stem cell differentiation network.

Authors:  M Ali Al-Radhawi; Nithin S Kumar; Eduardo D Sontag; Domitilla Del Vecchio
Journal:  Proc IEEE Conf Decis Control       Date:  2019-01-21

5.  Bone marrow hematopoietic dysfunction in untreated chronic lymphocytic leukemia patients.

Authors:  Bryce A Manso; Henan Zhang; Molly G Mikkelson; Kimberly A Gwin; Charla R Secreto; Wei Ding; Sameer A Parikh; Neil E Kay; Kay L Medina
Journal:  Leukemia       Date:  2018-10-05       Impact factor: 11.528

6.  More or less-On the influence of labelling strategies to infer cell population dynamics.

Authors:  Michael Gabel; Roland R Regoes; Frederik Graw
Journal:  PLoS One       Date:  2017-10-18       Impact factor: 3.240

Review 7.  Kinetic models of hematopoietic differentiation.

Authors:  Victor Olariu; Carsten Peterson
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2018-04-16

8.  Transcriptomic and Epigenomic Profiling of Histone Deacetylase Inhibitor Treatment Reveals Distinct Gene Regulation Profiles Leading to Impaired Neutrophil Development.

Authors:  Anita M A P Govers; Caroline R M Wiggers; Ruben van Boxtel; Michal Mokry; Edward E S Nieuwenhuis; Menno P Creyghton; Marije Bartels; Paul J Coffer
Journal:  Hemasphere       Date:  2019-08-07

9.  Characterization and generation of human definitive multipotent hematopoietic stem/progenitor cells.

Authors:  Yanling Zhu; Tianyu Wang; Jiaming Gu; Ke Huang; Tian Zhang; Zhishuai Zhang; He Liu; Jun Tang; Yuchan Mai; Yanqi Zhang; Yuhang Li; Yashu Feng; Baoqiang Kang; Jinbing Li; Yongli Shan; Qianyu Chen; Jian Zhang; Bing Long; Junwei Wang; Minghui Gao; Di Zhang; Min Zhou; Xiaofen Zhong; Jiekai Chen; Duanqing Pei; Jinfu Nie; Bing Liu; Guangjin Pan
Journal:  Cell Discov       Date:  2020-12-01       Impact factor: 10.849

10.  Single-Cell RNA-Sequencing Reveals a Continuous Spectrum of Differentiation in Hematopoietic Cells.

Authors:  Iain C Macaulay; Valentine Svensson; Charlotte Labalette; Lauren Ferreira; Fiona Hamey; Thierry Voet; Sarah A Teichmann; Ana Cvejic
Journal:  Cell Rep       Date:  2016-01-21       Impact factor: 9.423

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