Literature DB >> 24524133

Entering the era of single-cell transcriptomics in biology and medicine.

Rickard Sandberg.   

Abstract

Mesh：

Year:  2014        PMID： 24524133     DOI： 10.1038/nmeth.2764

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  29 in total

1.  Counting absolute numbers of molecules using unique molecular identifiers.

Authors:  Teemu Kivioja; Anna Vähärautio; Kasper Karlsson; Martin Bonke; Martin Enge; Sten Linnarsson; Jussi Taipale
Journal:  Nat Methods       Date:  2011-11-20       Impact factor: 28.547

Review 2.  Single-cell sequencing-based technologies will revolutionize whole-organism science.

Authors:  Ehud Shapiro; Tamir Biezuner; Sten Linnarsson
Journal:  Nat Rev Genet       Date:  2013-07-30       Impact factor: 53.242

3.  Proliferating cells express mRNAs with shortened 3' untranslated regions and fewer microRNA target sites.

Authors:  Rickard Sandberg; Joel R Neilson; Arup Sarma; Phillip A Sharp; Christopher B Burge
Journal:  Science       Date:  2008-06-20       Impact factor: 47.728

4.  Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq.

Authors:  Saiful Islam; Una Kjällquist; Annalena Moliner; Pawel Zajac; Jian-Bing Fan; Peter Lönnerberg; Sten Linnarsson
Journal:  Genome Res       Date:  2011-05-04       Impact factor: 9.043

5.  CEL-Seq: single-cell RNA-Seq by multiplexed linear amplification.

Authors:  Tamar Hashimshony; Florian Wagner; Noa Sher; Itai Yanai
Journal:  Cell Rep       Date:  2012-08-30       Impact factor: 9.423

Review 6.  Nature, nurture, or chance: stochastic gene expression and its consequences.

Authors:  Arjun Raj; Alexander van Oudenaarden
Journal:  Cell       Date:  2008-10-17       Impact factor: 41.582

7.  Tracing the derivation of embryonic stem cells from the inner cell mass by single-cell RNA-Seq analysis.

Authors:  Fuchou Tang; Catalin Barbacioru; Siqin Bao; Caroline Lee; Ellen Nordman; Xiaohui Wang; Kaiqin Lao; M Azim Surani
Journal:  Cell Stem Cell       Date:  2010-05-07       Impact factor: 24.633

Review 8.  Transcriptional regulatory circuits: predicting numbers from alphabets.

Authors:  Harold D Kim; Tal Shay; Erin K O'Shea; Aviv Regev
Journal:  Science       Date:  2009-07-24       Impact factor: 47.728

9.  Transcriptional pulsing of a developmental gene.

Authors:  Jonathan R Chubb; Tatjana Trcek; Shailesh M Shenoy; Robert H Singer
Journal:  Curr Biol       Date:  2006-05-23       Impact factor: 10.834

10.  RNA sequencing of pancreatic circulating tumour cells implicates WNT signalling in metastasis.

Authors:  Min Yu; David T Ting; Shannon L Stott; Ben S Wittner; Fatih Ozsolak; Suchismita Paul; Jordan C Ciciliano; Malgorzata E Smas; Daniel Winokur; Anna J Gilman; Matthew J Ulman; Kristina Xega; Gianmarco Contino; Brinda Alagesan; Brian W Brannigan; Patrice M Milos; David P Ryan; Lecia V Sequist; Nabeel Bardeesy; Sridhar Ramaswamy; Mehmet Toner; Shyamala Maheswaran; Daniel A Haber
Journal:  Nature       Date:  2012-07-26       Impact factor: 49.962
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  100 in total

Review 1.  Random monoallelic expression of autosomal genes: stochastic transcription and allele-level regulation.

Authors:  Björn Reinius; Rickard Sandberg
Journal:  Nat Rev Genet       Date:  2015-10-07       Impact factor: 53.242

Review 2.  Mechanisms of fate decision and lineage commitment during haematopoiesis.

Authors:  Ana Cvejic
Journal:  Immunol Cell Biol       Date:  2015-11-03       Impact factor: 5.126

3.  Electrophysiological, transcriptomic and morphologic profiling of single neurons using Patch-seq.

Authors:  Cathryn R Cadwell; Athanasia Palasantza; Xiaolong Jiang; Philipp Berens; Qiaolin Deng; Marlene Yilmaz; Jacob Reimer; Shan Shen; Matthias Bethge; Kimberley F Tolias; Rickard Sandberg; Andreas S Tolias
Journal:  Nat Biotechnol       Date:  2015-12-21       Impact factor: 54.908

Review 4.  Systems biology: perspectives on multiscale modeling in research on endocrine-related cancers.

Authors:  Robert Clarke; John J Tyson; Ming Tan; William T Baumann; Lu Jin; Jianhua Xuan; Yue Wang
Journal:  Endocr Relat Cancer       Date:  2019-06       Impact factor: 5.678

Review 5.  Materials and microfluidics: enabling the efficient isolation and analysis of circulating tumour cells.

Authors:  Joshua M Jackson; Małgorzata A Witek; Joyce W Kamande; Steven A Soper
Journal:  Chem Soc Rev       Date:  2017-07-17       Impact factor: 54.564

Review 6.  Advances and applications of single-cell sequencing technologies.

Authors:  Yong Wang; Nicholas E Navin
Journal:  Mol Cell       Date:  2015-05-21       Impact factor: 17.970

Review 7.  Preparation of Single-Cell RNA-Seq Libraries for Next Generation Sequencing.

Authors:  John J Trombetta; David Gennert; Diana Lu; Rahul Satija; Alex K Shalek; Aviv Regev
Journal:  Curr Protoc Mol Biol       Date:  2014-07-01

8.  Single-Cell RNA Sequencing Reveals Expanded Clones of Islet Antigen-Reactive CD4+ T Cells in Peripheral Blood of Subjects with Type 1 Diabetes.

Authors:  Karen Cerosaletti; Fariba Barahmand-Pour-Whitman; Junbao Yang; Hannah A DeBerg; Matthew J Dufort; Sara A Murray; Elisabeth Israelsson; Cate Speake; Vivian H Gersuk; James A Eddy; Helena Reijonen; Carla J Greenbaum; William W Kwok; Erik Wambre; Martin Prlic; Raphael Gottardo; Gerald T Nepom; Peter S Linsley
Journal:  J Immunol       Date:  2017-05-31       Impact factor: 5.422

9.  Predicting the functional states of human iPSC-derived neurons with single-cell RNA-seq and electrophysiology.

Authors:  C Bardy; M van den Hurk; B Kakaradov; J A Erwin; B N Jaeger; R V Hernandez; T Eames; A A Paucar; M Gorris; C Marchand; R Jappelli; J Barron; A K Bryant; M Kellogg; R S Lasken; B P F Rutten; H W M Steinbusch; G W Yeo; F H Gage
Journal:  Mol Psychiatry       Date:  2016-10-04       Impact factor: 15.992

10.  Deciphering Metabolic Heterogeneity by Single-Cell Analysis.

Authors:  Tom M J Evers; Mazène Hochane; Sander J Tans; Ron M A Heeren; Stefan Semrau; Peter Nemes; Alireza Mashaghi
Journal:  Anal Chem       Date:  2019-10-08       Impact factor: 6.986
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