Literature DB >> 26524650

Deterministic multidimensional nonuniform gap sampling.

Bradley Worley1, Robert Powers2.   

Abstract

Born from empirical observations in nonuniformly sampled multidimensional NMR data relating to gaps between sampled points, the Poisson-gap sampling method has enjoyed widespread use in biomolecular NMR. While the majority of nonuniform sampling schemes are fully randomly drawn from probability densities that vary over a Nyquist grid, the Poisson-gap scheme employs constrained random deviates to minimize the gaps between sampled grid points. We describe a deterministic gap sampling method, based on the average behavior of Poisson-gap sampling, which performs comparably to its random counterpart with the additional benefit of completely deterministic behavior. We also introduce a general algorithm for multidimensional nonuniform sampling based on a gap equation, and apply it to yield a deterministic sampling scheme that combines burst-mode sampling features with those of Poisson-gap schemes. Finally, we derive a relationship between stochastic gap equations and the expectation value of their sampling probability densities.
Copyright © 2015 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Deterministic sampling; NMR; NUS; Poisson-gap

Mesh:

Year:  2015        PMID: 26524650      PMCID: PMC4970466          DOI: 10.1016/j.jmr.2015.09.016

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  23 in total

1.  Accelerated acquisition of high resolution triple-resonance spectra using non-uniform sampling and maximum entropy reconstruction.

Authors:  David Rovnyak; Dominique P Frueh; Mallika Sastry; Zhen-Yu J Sun; Alan S Stern; Jeffrey C Hoch; Gerhard Wagner
Journal:  J Magn Reson       Date:  2004-09       Impact factor: 2.229

Review 2.  Resolution and sensitivity of high field nuclear magnetic resonance spectroscopy.

Authors:  D Rovnyak; J C Hoch; A S Stern; G Wagner
Journal:  J Biomol NMR       Date:  2004-09       Impact factor: 2.835

3.  Randomization improves sparse sampling in multidimensional NMR.

Authors:  Jeffrey C Hoch; Mark W Maciejewski; Blagoje Filipovic
Journal:  J Magn Reson       Date:  2008-05-21       Impact factor: 2.229

4.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

5.  Exploring signal-to-noise ratio and sensitivity in non-uniformly sampled multi-dimensional NMR spectra.

Authors:  Sven G Hyberts; Scott A Robson; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2012-12-29       Impact factor: 2.835

Review 6.  Applications of non-uniform sampling and processing.

Authors:  Sven G Hyberts; Haribabu Arthanari; Gerhard Wagner
Journal:  Top Curr Chem       Date:  2012

Review 7.  Data sampling in multidimensional NMR: fundamentals and strategies.

Authors:  Mark W Maciejewski; Mehdi Mobli; Adam D Schuyler; Alan S Stern; Jeffrey C Hoch
Journal:  Top Curr Chem       Date:  2012

8.  Poisson-gap sampling and forward maximum entropy reconstruction for enhancing the resolution and sensitivity of protein NMR data.

Authors:  Sven G Hyberts; Koh Takeuchi; Gerhard Wagner
Journal:  J Am Chem Soc       Date:  2010-02-24       Impact factor: 15.419

Review 9.  Perspectives in magnetic resonance: NMR in the post-FFT era.

Authors:  Sven G Hyberts; Haribabu Arthanari; Scott A Robson; Gerhard Wagner
Journal:  J Magn Reson       Date:  2014-04       Impact factor: 2.229

10.  Nonuniform sampling and spectral aliasing.

Authors:  Mark W Maciejewski; Harry Z Qui; Iulian Rujan; Mehdi Mobli; Jeffrey C Hoch
Journal:  J Magn Reson       Date:  2009-04-16       Impact factor: 2.229

View more
  14 in total

1.  NMR Metabolomics Protocols for Drug Discovery.

Authors:  Fatema Bhinderwala; Robert Powers
Journal:  Methods Mol Biol       Date:  2019

2.  Metabolomics Analyses from Tissues in Parkinson's Disease.

Authors:  Fatema Bhinderwala; Shulei Lei; Jade Woods; Jordan Rose; Darrell D Marshall; Eli Riekeberg; Aline De Lima Leite; Martha Morton; Eric D Dodds; Rodrigo Franco; Robert Powers
Journal:  Methods Mol Biol       Date:  2019

3.  Nonuniform sampling in multidimensional NMR for improving spectral sensitivity.

Authors:  Matthew A Zambrello; Adam D Schuyler; Mark W Maciejewski; Frank Delaglio; Irina Bezsonova; Jeffrey C Hoch
Journal:  Methods       Date:  2018-03-06       Impact factor: 3.608

4.  Subrandom methods for multidimensional nonuniform sampling.

Authors:  Bradley Worley
Journal:  J Magn Reson       Date:  2016-06-09       Impact factor: 2.229

5.  Convex accelerated maximum entropy reconstruction.

Authors:  Bradley Worley
Journal:  J Magn Reson       Date:  2016-02-10       Impact factor: 2.229

6.  Non-Uniform Sampling for All: More NMR Spectral Quality, Less Measurement Time.

Authors:  Frank Delaglio; Gregory S Walker; Kathleen A Farley; Raman Sharma; Jeffrey C Hoch; Luke W Arbogast; Robert G Brinson; John P Marino
Journal:  Am Pharm Rev       Date:  2017-06-30

7.  Robust and transferable quantification of NMR spectral quality using IROC analysis.

Authors:  Matthew A Zambrello; Mark W Maciejewski; Adam D Schuyler; Gerard Weatherby; Jeffrey C Hoch
Journal:  J Magn Reson       Date:  2017-10-16       Impact factor: 2.229

8.  Phosphorus NMR and Its Application to Metabolomics.

Authors:  Fatema Bhinderwala; Paula Evans; Kaleb Jones; Benjamin R Laws; Thomas G Smith; Martha Morton; Robert Powers
Journal:  Anal Chem       Date:  2020-06-29       Impact factor: 6.986

9.  The influence of the probability density function on spectral quality in nonuniformly sampled multidimensional NMR.

Authors:  Matthew A Zambrello; D Levi Craft; Jeffrey C Hoch; David Rovnyak; Adam D Schuyler
Journal:  J Magn Reson       Date:  2019-12-20       Impact factor: 2.229

10.  DNAJA1 Dysregulates Metabolism Promoting an Antiapoptotic Phenotype in Pancreatic Ductal Adenocarcinoma.

Authors:  Heidi E Roth; Fatema Bhinderwala; Rodrigo Franco; You Zhou; Robert Powers
Journal:  J Proteome Res       Date:  2021-07-15       Impact factor: 4.466

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.