Literature DB >> 26515097

Uncoupling binding of substrate CO from turnover by vanadium nitrogenase.

Chi Chung Lee1, Aaron W Fay1, Tsu-Chien Weng2, Courtney M Krest3, Britt Hedman3, Keith O Hodgson4, Yilin Hu5, Markus W Ribbe6.   

Abstract

Biocatalysis by nitrogenase, particularly the reduction of N2 and CO by this enzyme, has tremendous significance in environment- and energy-related areas. Elucidation of the detailed mechanism of nitrogenase has been hampered by the inability to trap substrates or intermediates in a well-defined state. Here, we report the capture of substrate CO on the resting-state vanadium-nitrogenase in a catalytically competent conformation. The close resemblance of this active CO-bound conformation to the recently described structure of CO-inhibited molybdenum-nitrogenase points to the mechanistic relevance of sulfur displacement to the activation of iron sites in the cofactor for CO binding. Moreover, the ability of vanadium-nitrogenase to bind substrate in the resting-state uncouples substrate binding from subsequent turnover, providing a platform for generation of defined intermediate(s) of both CO and N2 reduction.

Entities:  

Keywords:  carbon monoxide; nitrogenase; substrate binding; turnover; vanadium

Mesh:

Substances:

Year:  2015        PMID: 26515097      PMCID: PMC4653198          DOI: 10.1073/pnas.1519696112

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  23 in total

1.  Mechanism of Molybdenum Nitrogenase.

Authors:  Barbara K. Burgess; David J. Lowe
Journal:  Chem Rev       Date:  1996-11-07       Impact factor: 60.622

2.  Extending the carbon chain: hydrocarbon formation catalyzed by vanadium/molybdenum nitrogenases.

Authors:  Yilin Hu; Chi Chung Lee; Markus W Ribbe
Journal:  Science       Date:  2011-08-05       Impact factor: 47.728

3.  Electron inventory, kinetic assignment (E(n)), structure, and bonding of nitrogenase turnover intermediates with C2H2 and CO.

Authors:  Hong-In Lee; Morten Sørlie; Jason Christiansen; Tran-Chin Yang; Junlong Shao; Dennis R Dean; Brian J Hales; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2005-11-16       Impact factor: 15.419

4.  Electron-accepting properties of cytochrome o purified from Vitreoscilla.

Authors:  B Tyree; D A Webster
Journal:  J Biol Chem       Date:  1978-11-10       Impact factor: 5.157

5.  How many metals does it take to fix N2? A mechanistic overview of biological nitrogen fixation.

Authors:  James B Howard; Douglas C Rees
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-06       Impact factor: 11.205

6.  Characterization of isolated nitrogenase FeVco.

Authors:  Aaron W Fay; Michael A Blank; Chi Chung Lee; Yilin Hu; Keith O Hodgson; Britt Hedman; Markus W Ribbe
Journal:  J Am Chem Soc       Date:  2010-09-15       Impact factor: 15.419

7.  Instantaneous, stoichiometric generation of powerfully reducing states of protein active sites using Eu(II) and polyaminocarboxylate ligands.

Authors:  Kylie A Vincent; Gareth J Tilley; Nina C Quammie; Ian Streeter; Barbara K Burgess; Myles R Cheesman; Fraser A Armstrong
Journal:  Chem Commun (Camb)       Date:  2003-10-21       Impact factor: 6.222

8.  Photo-lability of CO bound to Mo-nitrogenase from Azotobacter vinelandii.

Authors:  Zofia Maskos; Brian J Hales
Journal:  J Inorg Biochem       Date:  2003-01-01       Impact factor: 4.155

9.  FeMo cofactor synthesis by a nifH mutant with altered MgATP reactivity.

Authors:  N Gavini; B K Burgess
Journal:  J Biol Chem       Date:  1992-10-15       Impact factor: 5.157

10.  Ligand binding to the FeMo-cofactor: structures of CO-bound and reactivated nitrogenase.

Authors:  Thomas Spatzal; Kathryn A Perez; Oliver Einsle; James B Howard; Douglas C Rees
Journal:  Science       Date:  2014-09-26       Impact factor: 47.728

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  12 in total

1.  Evaluation of the Catalytic Relevance of the CO-Bound States of V-Nitrogenase.

Authors:  Chi Chung Lee; Jarett Wilcoxen; Caleb J Hiller; R David Britt; Yilin Hu
Journal:  Angew Chem Int Ed Engl       Date:  2018-03-01       Impact factor: 15.336

Review 2.  Reduction of Substrates by Nitrogenases.

Authors:  Lance C Seefeldt; Zhi-Yong Yang; Dmitriy A Lukoyanov; Derek F Harris; Dennis R Dean; Simone Raugei; Brian M Hoffman
Journal:  Chem Rev       Date:  2020-03-16       Impact factor: 60.622

Review 3.  Reactivity, Mechanism, and Assembly of the Alternative Nitrogenases.

Authors:  Andrew J Jasniewski; Chi Chung Lee; Markus W Ribbe; Yilin Hu
Journal:  Chem Rev       Date:  2020-03-04       Impact factor: 60.622

Review 4.  Maturation of nitrogenase cofactor-the role of a class E radical SAM methyltransferase NifB.

Authors:  Yilin Hu; Markus W Ribbe
Journal:  Curr Opin Chem Biol       Date:  2016-03-09       Impact factor: 8.822

Review 5.  Second and Outer Coordination Sphere Effects in Nitrogenase, Hydrogenase, Formate Dehydrogenase, and CO Dehydrogenase.

Authors:  Sven T Stripp; Benjamin R Duffus; Vincent Fourmond; Christophe Léger; Silke Leimkühler; Shun Hirota; Yilin Hu; Andrew Jasniewski; Hideaki Ogata; Markus W Ribbe
Journal:  Chem Rev       Date:  2022-07-18       Impact factor: 72.087

6.  Synthesis and Functionalization Reactivity of Fe-Thiocarbonyl and Thiocarbyne Complexes.

Authors:  Meaghan M Deegan; Jonas C Peters
Journal:  Polyhedron       Date:  2021-09-04       Impact factor: 2.975

Review 7.  The Spectroscopy of Nitrogenases.

Authors:  Casey Van Stappen; Laure Decamps; George E Cutsail; Ragnar Bjornsson; Justin T Henthorn; James A Birrell; Serena DeBeer
Journal:  Chem Rev       Date:  2020-04-02       Impact factor: 60.622

8.  Comparative electronic structures of nitrogenase FeMoco and FeVco.

Authors:  Julian A Rees; Ragnar Bjornsson; Joanna K Kowalska; Frederico A Lima; Julia Schlesier; Daniel Sippel; Thomas Weyhermüller; Oliver Einsle; Julie A Kovacs; Serena DeBeer
Journal:  Dalton Trans       Date:  2017-02-21       Impact factor: 4.390

9.  Large Hydrogen Isotope Fractionation Distinguishes Nitrogenase-Derived Methane from Other Methane Sources.

Authors:  Katja E Luxem; William D Leavitt; Xinning Zhang
Journal:  Appl Environ Microbiol       Date:  2020-09-17       Impact factor: 4.792

10.  Quantum Mechanics/Molecular Mechanics Study of Resting-State Vanadium Nitrogenase: Molecular and Electronic Structure of the Iron-Vanadium Cofactor.

Authors:  Bardi Benediktsson; Ragnar Bjornsson
Journal:  Inorg Chem       Date:  2020-08-05       Impact factor: 5.165

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