Literature DB >> 26969410

Maturation of nitrogenase cofactor-the role of a class E radical SAM methyltransferase NifB.

Yilin Hu1, Markus W Ribbe2.   

Abstract

Nitrogenase catalyzes the important reactions of N2-reduction, CO-reduction and CO2-reduction at its active cofactor site. Designated the M-cluster, this complex metallocofactor is assembled through the generation of a characteristic 8Fe-core before the insertion of Mo and homocitrate that completes the stoichiometry of the M-cluster. NifB catalyzes the crucial step of radical SAM-dependent carbide insertion that occurs concomitant with the insertion a '9th' sulfur and the rearrangement/coupling of two 4Fe-clusters into a complete 8Fe-core of the M-cluster. Further categorization of a family of NifB proteins as a new class of radical SAM methyltransferases suggests a general function of these proteins in complex metallocofactor assembly and provides a new platform for unveiling unprecedented chemical reactions catalyzed by biological systems.
Copyright © 2016 Elsevier Ltd. All rights reserved.

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Year:  2016        PMID: 26969410      PMCID: PMC4870152          DOI: 10.1016/j.cbpa.2016.02.016

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  42 in total

1.  Mechanism of Molybdenum Nitrogenase.

Authors:  Barbara K. Burgess; David J. Lowe
Journal:  Chem Rev       Date:  1996-11-07       Impact factor: 60.622

2.  Nitrogenase MoFe-protein at 1.16 A resolution: a central ligand in the FeMo-cofactor.

Authors:  Oliver Einsle; F Akif Tezcan; Susana L A Andrade; Benedikt Schmid; Mika Yoshida; James B Howard; Douglas C Rees
Journal:  Science       Date:  2002-09-06       Impact factor: 47.728

Review 3.  Radical SAM enzymes in methylation and methylthiolation.

Authors:  Rachel U Hutcheson; Joan B Broderick
Journal:  Metallomics       Date:  2012-09-19       Impact factor: 4.526

Review 4.  Biosynthesis of the iron-molybdenum cofactor of nitrogenase.

Authors:  Yilin Hu; Markus W Ribbe
Journal:  J Biol Chem       Date:  2013-03-28       Impact factor: 5.157

5.  Two Fe-S clusters catalyze sulfur insertion by radical-SAM methylthiotransferases.

Authors:  Farhad Forouhar; Simon Arragain; Mohamed Atta; Serge Gambarelli; Jean-Marie Mouesca; Munif Hussain; Rong Xiao; Sylvie Kieffer-Jaquinod; Jayaraman Seetharaman; Thomas B Acton; Gaetano T Montelione; Etienne Mulliez; John F Hunt; Marc Fontecave
Journal:  Nat Chem Biol       Date:  2013-03-31       Impact factor: 15.040

6.  NifEN-B complex of Azotobacter vinelandii is fully functional in nitrogenase FeMo cofactor assembly.

Authors:  Jared A Wiig; Yilin Hu; Markus W Ribbe
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-05       Impact factor: 11.205

Review 7.  Mechanistic diversity of radical S-adenosylmethionine (SAM)-dependent methylation.

Authors:  Matthew R Bauerle; Erica L Schwalm; Squire J Booker
Journal:  J Biol Chem       Date:  2014-12-04       Impact factor: 5.157

8.  Optimization of FeMoco maturation on NifEN.

Authors:  Janice M Yoshizawa; Michael A Blank; Aaron W Fay; Chi Chung Lee; Jared A Wiig; Yilin Hu; Keith O Hodgson; Britt Hedman; Markus W Ribbe
Journal:  J Am Chem Soc       Date:  2009-07-08       Impact factor: 15.419

9.  Structure of precursor-bound NifEN: a nitrogenase FeMo cofactor maturase/insertase.

Authors:  Jens T Kaiser; Yilin Hu; Jared A Wiig; Douglas C Rees; Markus W Ribbe
Journal:  Science       Date:  2011-01-07       Impact factor: 47.728

10.  Ligand binding to the FeMo-cofactor: structures of CO-bound and reactivated nitrogenase.

Authors:  Thomas Spatzal; Kathryn A Perez; Oliver Einsle; James B Howard; Douglas C Rees
Journal:  Science       Date:  2014-09-26       Impact factor: 47.728

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  11 in total

1.  Enhanced Solubilization of Class B Radical S-Adenosylmethionine Methylases by Improved Cobalamin Uptake in Escherichia coli.

Authors:  Nicholas D Lanz; Anthony J Blaszczyk; Erin L McCarthy; Bo Wang; Roy X Wang; Brianne S Jones; Squire J Booker
Journal:  Biochemistry       Date:  2018-02-19       Impact factor: 3.162

Review 2.  Reactivity, Mechanism, and Assembly of the Alternative Nitrogenases.

Authors:  Andrew J Jasniewski; Chi Chung Lee; Markus W Ribbe; Yilin Hu
Journal:  Chem Rev       Date:  2020-03-04       Impact factor: 60.622

Review 3.  Spectroscopic Characterization of an Eight-Iron Nitrogenase Cofactor Precursor that Lacks the "9th Sulfur".

Authors:  Andrew J Jasniewski; Jarett Wilcoxen; Kazuki Tanifuji; Britt Hedman; Keith O Hodgson; R David Britt; Yilin Hu; Markus W Ribbe
Journal:  Angew Chem Int Ed Engl       Date:  2019-09-05       Impact factor: 15.336

Review 4.  Highlighting the Unique Roles of Radical S-Adenosylmethionine Enzymes in Methanogenic Archaea.

Authors:  Kaleb Boswinkle; Justin McKinney; Kylie D Allen
Journal:  J Bacteriol       Date:  2022-07-26       Impact factor: 3.476

Review 5.  Radical SAM-dependent formation of a nitrogenase cofactor core on NifB.

Authors:  Yiling A Liu; Robert Quechol; Joseph B Solomon; Chi Chung Lee; Markus W Ribbe; Yilin Hu; Britt Hedman; Keith O Hodgson
Journal:  J Inorg Biochem       Date:  2022-04-20       Impact factor: 4.336

6.  TsrM as a Model for Purifying and Characterizing Cobalamin-Dependent Radical S-Adenosylmethionine Methylases.

Authors:  Anthony J Blaszczyk; Roy X Wang; Squire J Booker
Journal:  Methods Enzymol       Date:  2017-08-21       Impact factor: 1.600

7.  Electron Paramagnetic Resonance and Magnetic Circular Dichroism Spectra of the Nitrogenase M Cluster Precursor Suggest Sulfur Migration upon Oxidation: A Proposal for Substrate and Inhibitor Binding.

Authors:  Kresimir Rupnik; Kazuki Tanifuji; Lee Rettberg; Markus W Ribbe; Yilin Hu; Brian J Hales
Journal:  Chembiochem       Date:  2020-02-20       Impact factor: 3.164

Review 8.  On the Role of Additional [4Fe-4S] Clusters with a Free Coordination Site in Radical-SAM Enzymes.

Authors:  Etienne Mulliez; Victor Duarte; Simon Arragain; Marc Fontecave; Mohamed Atta
Journal:  Front Chem       Date:  2017-03-16       Impact factor: 5.221

9.  Probing the coordination and function of Fe4S4 modules in nitrogenase assembly protein NifB.

Authors:  Lee A Rettberg; Jarett Wilcoxen; Chi Chung Lee; Martin T Stiebritz; Kazuki Tanifuji; R David Britt; Yilin Hu
Journal:  Nat Commun       Date:  2018-07-19       Impact factor: 14.919

Review 10.  Catalytic Promiscuity of the Radical S-adenosyl-L-methionine Enzyme NosL.

Authors:  Wei Ding; Xinjian Ji; Yongzhen Li; Qi Zhang
Journal:  Front Chem       Date:  2016-06-22       Impact factor: 5.221

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