Literature DB >> 32237739

The Spectroscopy of Nitrogenases.

Casey Van Stappen1, Laure Decamps1, George E Cutsail1, Ragnar Bjornsson1, Justin T Henthorn1, James A Birrell1, Serena DeBeer1.   

Abstract

<span class="Chemical">Nitrogenn>ases <span class="Chemical">are responsible for biological nitrogen fixation, a crucial step in the biogeochemical nitrogen cycle. These enzymes utilize a two-component protein system and a series of iron-sulfur clusters to perform this reaction, culminating at the FeMco active site (M = Mo, V, Fe), which is capable of binding and reducing N2 to 2NH3. In this review, we summarize how different spectroscopic approaches have shed light on various aspects of these enzymes, including their structure, mechanism, alternative reactivity, and maturation. Synthetic model chemistry and theory have also played significant roles in developing our present understanding of these systems and are discussed in the context of their contributions to interpreting the nature of nitrogenases. Despite years of significant progress, there is still much to be learned from these enzymes through spectroscopic means, and we highlight where further spectroscopic investigations are needed.

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Year:  2020        PMID: 32237739      PMCID: PMC7318057          DOI: 10.1021/acs.chemrev.9b00650

Source DB:  PubMed          Journal:  Chem Rev        ISSN: 0009-2665            Impact factor:   60.622


  489 in total

1.  In vitro biosynthesis of iron-molybdenum cofactor and maturation of the nif-encoded apodinitrogenase. Effect of substitution for NifH with site-specifically altered forms of NifH.

Authors:  P Rangaraj; M J Ryle; W N Lanzilotta; P W Ludden; V K Shah
Journal:  J Biol Chem       Date:  1999-07-09       Impact factor: 5.157

2.  Structural Basis of Biological Nitrogen Fixation.

Authors:  James B. Howard; Douglas C. Rees
Journal:  Chem Rev       Date:  1996-11-07       Impact factor: 60.622

3.  Insights into the geometric and electronic structure of transition metal centers from valence-to-core X-ray emission spectroscopy.

Authors:  Christopher J Pollock; Serena DeBeer
Journal:  Acc Chem Res       Date:  2015-09-24       Impact factor: 22.384

4.  Extending the carbon chain: hydrocarbon formation catalyzed by vanadium/molybdenum nitrogenases.

Authors:  Yilin Hu; Chi Chung Lee; Markus W Ribbe
Journal:  Science       Date:  2011-08-05       Impact factor: 47.728

5.  Electron transfer and half-reactivity in nitrogenase.

Authors:  Thomas A Clarke; Shirley Fairhurst; David J Lowe; Nicholas J Watmough; Robert R Eady
Journal:  Biochem Soc Trans       Date:  2011-01       Impact factor: 5.407

6.  MCD C-Term Signs, Saturation Behavior, and Determination of Band Polarizations in Randomly Oriented Systems with Spin S >/= (1)/(2). Applications to S = (1)/(2) and S = (5)/(2).

Authors:  Frank Neese; Edward I. Solomon
Journal:  Inorg Chem       Date:  1999-04-19       Impact factor: 5.165

7.  Binding sites of nitrogenase: kinetic and theoretical studies of cyanide binding to extracted FeMo-cofactor derivatives.

Authors:  Zhen Cui; Adrian J Dunford; Marcus C Durrant; Richard A Henderson; Barry E Smith
Journal:  Inorg Chem       Date:  2003-10-06       Impact factor: 5.165

8.  Origin-independent calculation of quadrupole intensities in X-ray spectroscopy.

Authors:  Stephan Bernadotte; Andrew J Atkins; Christoph R Jacob
Journal:  J Chem Phys       Date:  2012-11-28       Impact factor: 3.488

9.  ENDOR characterization of a synthetic diiron hydrazido complex as a model for nitrogenase intermediates.

Authors:  Nicholas S Lees; Rebecca L McNaughton; Wilda Vargas Gregory; Patrick L Holland; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2007-12-20       Impact factor: 15.419

10.  Low frequency dynamics of the nitrogenase MoFe protein via femtosecond pump probe spectroscopy - Observation of a candidate promoting vibration.

Authors:  Margherita Maiuri; Ines Delfino; Giulio Cerullo; Cristian Manzoni; Vladimir Pelmenschikov; Yisong Guo; Hongxin Wang; Leland B Gee; Christie H Dapper; William E Newton; Stephen P Cramer
Journal:  J Inorg Biochem       Date:  2015-07-14       Impact factor: 4.155

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  18 in total

1.  Postbiosynthetic modification of a precursor to the nitrogenase iron-molybdenum cofactor.

Authors:  Suppachai Srisantitham; Edward D Badding; Daniel L M Suess
Journal:  Proc Natl Acad Sci U S A       Date:  2021-03-08       Impact factor: 11.205

Review 2.  Second and Outer Coordination Sphere Effects in Nitrogenase, Hydrogenase, Formate Dehydrogenase, and CO Dehydrogenase.

Authors:  Sven T Stripp; Benjamin R Duffus; Vincent Fourmond; Christophe Léger; Silke Leimkühler; Shun Hirota; Yilin Hu; Andrew Jasniewski; Hideaki Ogata; Markus W Ribbe
Journal:  Chem Rev       Date:  2022-07-18       Impact factor: 72.087

3.  Synthetic molecular cluster hints at mechanism of nitrogen fixation.

Authors:  Daniël L J Broere
Journal:  Nature       Date:  2022-07       Impact factor: 69.504

4.  The E2 state of FeMoco: Hydride Formation versus Fe Reduction and a Mechanism for H2 Evolution.

Authors:  Albert Th Thorhallsson; Ragnar Bjornsson
Journal:  Chemistry       Date:  2021-10-15       Impact factor: 5.020

5.  Assignment of protonated R-homocitrate in extracted FeMo-cofactor of nitrogenase via vibrational circular dichroism spectroscopies.

Authors:  Lan Deng; Hongxin Wang; Christie H Dapper; William E Newton; Sergey Shilov; Shunlin Wang; Stephen P Cramer; Zhao-Hui Zhou
Journal:  Commun Chem       Date:  2020-10-28

Review 6.  In Situ/Operando Electrocatalyst Characterization by X-ray Absorption Spectroscopy.

Authors:  Janis Timoshenko; Beatriz Roldan Cuenya
Journal:  Chem Rev       Date:  2020-09-28       Impact factor: 60.622

7.  Comment on "Structural evidence for a dynamic metallocofactor during N2 reduction by Mo-nitrogenase".

Authors:  John W Peters; Oliver Einsle; Dennis R Dean; Serena DeBeer; Brian M Hoffman; Patrick L Holland; Lance C Seefeldt
Journal:  Science       Date:  2021-02-12       Impact factor: 47.728

8.  Exploring the Role of the Central Carbide of the Nitrogenase Active-Site FeMo-cofactor through Targeted 13C Labeling and ENDOR Spectroscopy.

Authors:  Ana Pérez-González; Zhi-Yong Yang; Dmitriy A Lukoyanov; Dennis R Dean; Lance C Seefeldt; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2021-06-10       Impact factor: 16.383

9.  Does the crystal structure of vanadium nitrogenase contain a reaction intermediate? Evidence from quantum refinement.

Authors:  Lili Cao; Octav Caldararu; Ulf Ryde
Journal:  J Biol Inorg Chem       Date:  2020-08-27       Impact factor: 3.358

10.  Quantum Mechanics/Molecular Mechanics Study of Resting-State Vanadium Nitrogenase: Molecular and Electronic Structure of the Iron-Vanadium Cofactor.

Authors:  Bardi Benediktsson; Ragnar Bjornsson
Journal:  Inorg Chem       Date:  2020-08-05       Impact factor: 5.165

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