Literature DB >> 26458101

Gating machinery of InsP3R channels revealed by electron cryomicroscopy.

Guizhen Fan1, Matthew L Baker2, Zhao Wang2, Mariah R Baker1, Pavel A Sinyagovskiy1, Wah Chiu2, Steven J Ludtke2, Irina I Serysheva1.   

Abstract

Inositol-1,4,5-trisphosphate receptors (InsP3Rs) are ubiquitous ion channels responsible for cytosolic Ca(2+) signalling and essential for a broad array of cellular processes ranging from contraction to secretion, and from proliferation to cell death. Despite decades of research on InsP3Rs, a mechanistic understanding of their structure-function relationship is lacking. Here we present the first, to our knowledge, near-atomic (4.7 Å) resolution electron cryomicroscopy structure of the tetrameric mammalian type 1 InsP3R channel in its apo-state. At this resolution, we are able to trace unambiguously ∼85% of the protein backbone, allowing us to identify the structural elements involved in gating and modulation of this 1.3-megadalton channel. Although the central Ca(2+)-conduction pathway is similar to other ion channels, including the closely related ryanodine receptor, the cytosolic carboxy termini are uniquely arranged in a left-handed α-helical bundle, directly interacting with the amino-terminal domains of adjacent subunits. This configuration suggests a molecular mechanism for allosteric regulation of channel gating by intracellular signals.

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Year:  2015        PMID: 26458101      PMCID: PMC4804758          DOI: 10.1038/nature15249

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  55 in total

1.  Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy.

Authors:  Peter B Rosenthal; Richard Henderson
Journal:  J Mol Biol       Date:  2003-10-31       Impact factor: 5.469

2.  Accurate determination of local defocus and specimen tilt in electron microscopy.

Authors:  Joseph A Mindell; Nikolaus Grigorieff
Journal:  J Struct Biol       Date:  2003-06       Impact factor: 2.867

3.  Protein structure prediction on the Web: a case study using the Phyre server.

Authors:  Lawrence A Kelley; Michael J E Sternberg
Journal:  Nat Protoc       Date:  2009       Impact factor: 13.491

4.  Inositol 1,4,5-trisphosphate receptors: distinct neuronal and nonneuronal forms derived by alternative splicing differ in phosphorylation.

Authors:  S K Danoff; C D Ferris; C Donath; G A Fischer; S Munemitsu; A Ullrich; S H Snyder; C A Ross
Journal:  Proc Natl Acad Sci U S A       Date:  1991-04-01       Impact factor: 11.205

5.  Gorgon and pathwalking: macromolecular modeling tools for subnanometer resolution density maps.

Authors:  Matthew L Baker; Mariah R Baker; Corey F Hryc; Tao Ju; Wah Chiu
Journal:  Biopolymers       Date:  2012-09       Impact factor: 2.505

6.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

7.  Validation of cryo-EM structure of IP₃R1 channel.

Authors:  Stephen C Murray; John Flanagan; Olga B Popova; Wah Chiu; Steven J Ludtke; Irina I Serysheva
Journal:  Structure       Date:  2013-05-23       Impact factor: 5.006

8.  Structure of the inositol 1,4,5-trisphosphate receptor binding core in complex with its ligand.

Authors:  Ivan Bosanac; Jean-René Alattia; Tapas K Mal; Jenny Chan; Susanna Talarico; Frances K Tong; Kit I Tong; Fumio Yoshikawa; Teiichi Furuichi; Miwako Iwai; Takayuki Michikawa; Katsuhiko Mikoshiba; Mitsuhiko Ikura
Journal:  Nature       Date:  2002-11-17       Impact factor: 49.962

9.  Outcome of the first electron microscopy validation task force meeting.

Authors:  Richard Henderson; Andrej Sali; Matthew L Baker; Bridget Carragher; Batsal Devkota; Kenneth H Downing; Edward H Egelman; Zukang Feng; Joachim Frank; Nikolaus Grigorieff; Wen Jiang; Steven J Ludtke; Ohad Medalia; Pawel A Penczek; Peter B Rosenthal; Michael G Rossmann; Michael F Schmid; Gunnar F Schröder; Alasdair C Steven; David L Stokes; John D Westbrook; Willy Wriggers; Huanwang Yang; Jasmine Young; Helen M Berman; Wah Chiu; Gerard J Kleywegt; Catherine L Lawson
Journal:  Structure       Date:  2012-02-08       Impact factor: 5.006

10.  Structure of the rabbit ryanodine receptor RyR1 at near-atomic resolution.

Authors:  Zhen Yan; Xiaochen Bai; Chuangye Yan; Jianping Wu; Zhangqiang Li; Tian Xie; Wei Peng; Changcheng Yin; Xueming Li; Sjors H W Scheres; Yigong Shi; Nieng Yan
Journal:  Nature       Date:  2014-12-15       Impact factor: 49.962

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  96 in total

1.  Unique Regulatory Properties of Heterotetrameric Inositol 1,4,5-Trisphosphate Receptors Revealed by Studying Concatenated Receptor Constructs.

Authors:  Rahul Chandrasekhar; Kamil J Alzayady; Larry E Wagner; David I Yule
Journal:  J Biol Chem       Date:  2016-01-11       Impact factor: 5.157

2.  De Novo modeling in cryo-EM density maps with Pathwalking.

Authors:  Muyuan Chen; Philip R Baldwin; Steven J Ludtke; Matthew L Baker
Journal:  J Struct Biol       Date:  2016-07-17       Impact factor: 2.867

Review 3.  Structure of IP3R channel: high-resolution insights from cryo-EM.

Authors:  Mariah R Baker; Guizhen Fan; Irina I Serysheva
Journal:  Curr Opin Struct Biol       Date:  2017-06-12       Impact factor: 6.809

Review 4.  Calcium Channels in Vascular Smooth Muscle.

Authors:  D Ghosh; A U Syed; M P Prada; M A Nystoriak; L F Santana; M Nieves-Cintrón; M F Navedo
Journal:  Adv Pharmacol       Date:  2016-10-14

Review 5.  Structure and Function of IP3 Receptors.

Authors:  David L Prole; Colin W Taylor
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-04-01       Impact factor: 10.005

Review 6.  Intracellular calcium release channels: an update.

Authors:  Gaetano Santulli; Ryutaro Nakashima; Qi Yuan; Andrew R Marks
Journal:  J Physiol       Date:  2017-05-15       Impact factor: 5.182

7.  Structure of the 30 kDa HIV-1 RNA Dimerization Signal by a Hybrid Cryo-EM, NMR, and Molecular Dynamics Approach.

Authors:  Kaiming Zhang; Sarah C Keane; Zhaoming Su; Rossitza N Irobalieva; Muyuan Chen; Verna Van; Carly A Sciandra; Jan Marchant; Xiao Heng; Michael F Schmid; David A Case; Steven J Ludtke; Michael F Summers; Wah Chiu
Journal:  Structure       Date:  2018-02-02       Impact factor: 5.006

Review 8.  The role of π-helices in TRP channel gating.

Authors:  Lejla Zubcevic; Seok-Yong Lee
Journal:  Curr Opin Struct Biol       Date:  2019-08-02       Impact factor: 6.809

9.  Structural Basis for Gating and Activation of RyR1.

Authors:  Amédée des Georges; Oliver B Clarke; Ran Zalk; Qi Yuan; Kendall J Condon; Robert A Grassucci; Wayne A Hendrickson; Andrew R Marks; Joachim Frank
Journal:  Cell       Date:  2016-09-22       Impact factor: 41.582

Review 10.  Why Calcium? How Calcium Became the Best Communicator.

Authors:  Ernesto Carafoli; Joachim Krebs
Journal:  J Biol Chem       Date:  2016-07-26       Impact factor: 5.157

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