Literature DB >> 27662087

Structural Basis for Gating and Activation of RyR1.

Amédée des Georges1, Oliver B Clarke2, Ran Zalk3, Qi Yuan3, Kendall J Condon1, Robert A Grassucci1, Wayne A Hendrickson4, Andrew R Marks5, Joachim Frank6.   

Abstract

The type-1 ryanodine receptor (RyR1) is an intracellular calcium (Ca(2+)) release channel required for skeletal muscle contraction. Here, we present cryo-EM reconstructions of RyR1 in multiple functional states revealing the structural basis of channel gating and ligand-dependent activation. Binding sites for the channel activators Ca(2+), ATP, and caffeine were identified at interdomain interfaces of the C-terminal domain. Either ATP or Ca(2+) alone induces conformational changes in the cytoplasmic assembly ("priming"), without pore dilation. In contrast, in the presence of all three activating ligands, high-resolution reconstructions of open and closed states of RyR1 were obtained from the same sample, enabling analyses of conformational changes associated with gating. Gating involves global conformational changes in the cytosolic assembly accompanied by local changes in the transmembrane domain, which include bending of the S6 transmembrane segment and consequent pore dilation, displacement, and deformation of the S4-S5 linker and conformational changes in the pseudo-voltage-sensor domain.
Copyright © 2016 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  RyR; calcium release; cryo-EM; excitation contraction coupling; gating; ryanodine; single-particle reconstruction; structure

Mesh:

Substances:

Year:  2016        PMID: 27662087      PMCID: PMC5142848          DOI: 10.1016/j.cell.2016.08.075

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  63 in total

1.  Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy.

Authors:  Peter B Rosenthal; Richard Henderson
Journal:  J Mol Biol       Date:  2003-10-31       Impact factor: 5.469

2.  HOLE: a program for the analysis of the pore dimensions of ion channel structural models.

Authors:  O S Smart; J G Neduvelil; X Wang; B A Wallace; M S Sansom
Journal:  J Mol Graph       Date:  1996-12

3.  Purified ryanodine receptor from skeletal muscle sarcoplasmic reticulum is the Ca2+-permeable pore of the calcium release channel.

Authors:  T Imagawa; J S Smith; R Coronado; K P Campbell
Journal:  J Biol Chem       Date:  1987-12-05       Impact factor: 5.157

4.  Electron microscopy and computer image averaging of ice-embedded large ribosomal subunits from Escherichia coli.

Authors:  T Wagenknecht; R Grassucci; J Frank
Journal:  J Mol Biol       Date:  1988-01-05       Impact factor: 5.469

5.  Structural factors that determine the ability of adenosine and related compounds to activate the cardiac ryanodine receptor.

Authors:  W M Chan; W Welch; R Sitsapesan
Journal:  Br J Pharmacol       Date:  2000-08       Impact factor: 8.739

6.  Jalview Version 2--a multiple sequence alignment editor and analysis workbench.

Authors:  Andrew M Waterhouse; James B Procter; David M A Martin; Michèle Clamp; Geoffrey J Barton
Journal:  Bioinformatics       Date:  2009-01-16       Impact factor: 6.937

7.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

8.  CTFFIND4: Fast and accurate defocus estimation from electron micrographs.

Authors:  Alexis Rohou; Nikolaus Grigorieff
Journal:  J Struct Biol       Date:  2015-08-13       Impact factor: 2.867

9.  Structure of the rabbit ryanodine receptor RyR1 at near-atomic resolution.

Authors:  Zhen Yan; Xiaochen Bai; Chuangye Yan; Jianping Wu; Zhangqiang Li; Tian Xie; Wei Peng; Changcheng Yin; Xueming Li; Sjors H W Scheres; Yigong Shi; Nieng Yan
Journal:  Nature       Date:  2014-12-15       Impact factor: 49.962

10.  Disease mutations in the ryanodine receptor N-terminal region couple to a mobile intersubunit interface.

Authors:  Lynn Kimlicka; Kelvin Lau; Ching-Chieh Tung; Filip Van Petegem
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

View more
  126 in total

Review 1.  Structure of IP3R channel: high-resolution insights from cryo-EM.

Authors:  Mariah R Baker; Guizhen Fan; Irina I Serysheva
Journal:  Curr Opin Struct Biol       Date:  2017-06-12       Impact factor: 6.809

Review 2.  Structure and Function of IP3 Receptors.

Authors:  David L Prole; Colin W Taylor
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-04-01       Impact factor: 10.005

3.  Two EF-hand motifs in ryanodine receptor calcium release channels contribute to isoform-specific regulation by calmodulin.

Authors:  Le Xu; Angela C Gomez; Daniel A Pasek; Gerhard Meissner; Naohiro Yamaguchi
Journal:  Cell Calcium       Date:  2017-06-06       Impact factor: 6.817

Review 4.  Ca2+ Release Channels Join the 'Resolution Revolution'.

Authors:  Ran Zalk; Andrew R Marks
Journal:  Trends Biochem Sci       Date:  2017-05-09       Impact factor: 13.807

5.  Wavelet Denoising of High-Bandwidth Nanopore and Ion-Channel Signals.

Authors:  Siddharth Shekar; Chen-Chi Chien; Andreas Hartel; Peijie Ong; Oliver B Clarke; Andrew Marks; Marija Drndic; Kenneth L Shepard
Journal:  Nano Lett       Date:  2019-01-07       Impact factor: 11.189

6.  The FKBP12 subunit modifies the long-range allosterism of the ryanodine receptor.

Authors:  Tyler W E Steele; Montserrat Samsó
Journal:  J Struct Biol       Date:  2019-01-11       Impact factor: 2.867

7.  Intracellular Calcium Mobilization Is Required for Sonic Hedgehog Signaling.

Authors:  Dana Klatt Shaw; Derrick Gunther; Michael J Jurynec; Alexis A Chagovetz; Erin Ritchie; David Jonah Grunwald
Journal:  Dev Cell       Date:  2018-05-10       Impact factor: 12.270

8.  A multi-dimensional analysis of genotype-phenotype discordance in malignant hyperthermia susceptibility.

Authors:  Carlos A Ibarra Moreno; Natalia Kraeva; Elena Zvaritch; Lourdes Figueroa; Eduardo Rios; Leslie Biesecker; Filip Van Petegem; Philip M Hopkins; Sheila Riazi
Journal:  Br J Anaesth       Date:  2020-08-27       Impact factor: 9.166

9.  Single-channel properties of skeletal muscle ryanodine receptor pore Δ4923FF4924 in two brothers with a lethal form of fetal akinesia.

Authors:  Le Xu; Frederike L Harms; Venkat R Chirasani; Daniel A Pasek; Fanny Kortüm; Peter Meinecke; Nikolay V Dokholyan; Kerstin Kutsche; Gerhard Meissner
Journal:  Cell Calcium       Date:  2020-02-17       Impact factor: 6.817

Review 10.  Understanding How Phosphorylation and Redox Modifications Regulate Cardiac Ryanodine Receptor Type 2 Activity to Produce an Arrhythmogenic Phenotype in Advanced Heart Failure.

Authors:  Alexander Dashwood; Elizabeth Cheesman; Nicole Beard; Haris Haqqani; Yee Weng Wong; Peter Molenaar
Journal:  ACS Pharmacol Transl Sci       Date:  2020-06-01
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.