Literature DB >> 26456818

Yeast Replicator: A High-Throughput Multiplexed Microfluidics Platform for Automated Measurements of Single-Cell Aging.

Ping Liu1, Thomas Z Young1, Murat Acar2.   

Abstract

The yeast Saccharomyces cerevisiae is a model organism for replicative aging studies; however, conventional lifespan measurement platforms have several limitations. Here, we present a microfluidics platform that facilitates simultaneous lifespan and gene expression measurements of aging yeast cells. Our multiplexed high-throughput platform offers the capability to perform independent lifespan experiments using different yeast strains or growth media. Using this platform in minimal media environments containing glucose, we measured the full lifespan of individual yeast cells in wild-type and canonical gene deletion backgrounds. Compared to glucose, in galactose we observed a 16.8% decrease in replicative lifespan accompanied by an ∼2-fold increase in single-cell oxidative stress levels reported by PSOD1-mCherry. Using PGAL1-YFP to measure the activity of the bistable galactose network, we saw that OFF and ON cells are similar in their lifespan. Our work shows that aging cells are committed to a single phenotypic state throughout their lifespan.
Copyright © 2015 The Authors. Published by Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 26456818      PMCID: PMC4618498          DOI: 10.1016/j.celrep.2015.09.012

Source DB:  PubMed          Journal:  Cell Rep            Impact factor:   9.423


  36 in total

1.  A positive-feedback-based bistable 'memory module' that governs a cell fate decision.

Authors:  Wen Xiong; James E Ferrell
Journal:  Nature       Date:  2003-11-27       Impact factor: 49.962

2.  Control of stochasticity in eukaryotic gene expression.

Authors:  Jonathan M Raser; Erin K O'Shea
Journal:  Science       Date:  2004-05-27       Impact factor: 47.728

3.  A noisy linear map underlies oscillations in cell size and gene expression in bacteria.

Authors:  Yu Tanouchi; Anand Pai; Heungwon Park; Shuqiang Huang; Rumen Stamatov; Nicolas E Buchler; Lingchong You
Journal:  Nature       Date:  2015-06-03       Impact factor: 49.962

4.  The SAGA histone deubiquitinase module controls yeast replicative lifespan via Sir2 interaction.

Authors:  Mark A McCormick; Amanda G Mason; Stephan J Guyenet; Weiwei Dang; Renee M Garza; Marc K Ting; Rick M Moller; Shelley L Berger; Matt Kaeberlein; Lorraine Pillus; Albert R La Spada; Brian K Kennedy
Journal:  Cell Rep       Date:  2014-07-18       Impact factor: 9.423

5.  Evolution of gene network activity by tuning the strength of negative-feedback regulation.

Authors:  Weilin Peng; Ping Liu; Yuan Xue; Murat Acar
Journal:  Nat Commun       Date:  2015-02-11       Impact factor: 14.919

Review 6.  The chronological life span of Saccharomyces cerevisiae.

Authors:  Paola Fabrizio; Valter D Longo
Journal:  Aging Cell       Date:  2003-04       Impact factor: 9.304

7.  Calendar life span versus budding life span of Saccharomyces cerevisiae.

Authors:  I Müller; M Zimmermann; D Becker; M Flömer
Journal:  Mech Ageing Dev       Date:  1980-01       Impact factor: 5.432

8.  A microfluidic system for studying ageing and dynamic single-cell responses in budding yeast.

Authors:  Matthew M Crane; Ivan B N Clark; Elco Bakker; Stewart Smith; Peter S Swain
Journal:  PLoS One       Date:  2014-06-20       Impact factor: 3.240

9.  Calorie restriction-mediated replicative lifespan extension in yeast is non-cell autonomous.

Authors:  Szu-Chieh Mei; Charles Brenner
Journal:  PLoS Biol       Date:  2015-01-29       Impact factor: 8.029

10.  Sir2-independent life span extension by calorie restriction in yeast.

Authors:  Matt Kaeberlein; Kathryn T Kirkland; Stanley Fields; Brian K Kennedy
Journal:  PLoS Biol       Date:  2004-08-24       Impact factor: 8.029

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  28 in total

1.  Maximum Caliber Can Build and Infer Models of Oscillation in a Three-Gene Feedback Network.

Authors:  Taylor Firman; Anar Amgalan; Kingshuk Ghosh
Journal:  J Phys Chem B       Date:  2019-01-09       Impact factor: 2.991

2.  A High-Throughput Screen for Yeast Replicative Lifespan Identifies Lifespan-Extending Compounds.

Authors:  Ethan A Sarnoski; Ping Liu; Murat Acar
Journal:  Cell Rep       Date:  2017-11-28       Impact factor: 9.423

3.  Multigenerational silencing dynamics control cell aging.

Authors:  Yang Li; Meng Jin; Richard O'Laughlin; Philip Bittihn; Lev S Tsimring; Lorraine Pillus; Jeff Hasty; Nan Hao
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-03       Impact factor: 11.205

Review 4.  Microfluidic technologies for yeast replicative lifespan studies.

Authors:  Kenneth L Chen; Matthew M Crane; Matt Kaeberlein
Journal:  Mech Ageing Dev       Date:  2016-03-23       Impact factor: 5.432

5.  Microfluidic Platforms for Yeast-Based Aging Studies.

Authors:  Myeong Chan Jo; Lidong Qin
Journal:  Small       Date:  2016-09-26       Impact factor: 13.281

6.  The paths of mortality: how understanding the biology of aging can help explain systems behavior of single cells.

Authors:  Matthew M Crane; Matt Kaeberlein
Journal:  Curr Opin Syst Biol       Date:  2017-12-06

7.  Characterization of the impact of GMP/GDP synthesis inhibition on replicative lifespan extension in yeast.

Authors:  Ping Liu; Ethan A Sarnoski; Tolga T Olmez; Thomas Z Young; Murat Acar
Journal:  Curr Genet       Date:  2020-03-30       Impact factor: 3.886

Review 8.  Modeling aging and its impact on cellular function and organismal behavior.

Authors:  Emerson Santiago; David F Moreno; Murat Acar
Journal:  Exp Gerontol       Date:  2021-09-26       Impact factor: 4.032

Review 9.  Trajectories of Aging: How Systems Biology in Yeast Can Illuminate Mechanisms of Personalized Aging.

Authors:  Matthew M Crane; Kenneth L Chen; Ben W Blue; Matt Kaeberlein
Journal:  Proteomics       Date:  2019-11-04       Impact factor: 3.984

10.  A Microfluidic Device for Massively Parallel, Whole-lifespan Imaging of Single Fission Yeast Cells.

Authors:  Stephen K Jones; Eric C Spivey; James R Rybarski; Ilya J Finkelstein
Journal:  Bio Protoc       Date:  2018-04-05
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