Literature DB >> 34582969

Modeling aging and its impact on cellular function and organismal behavior.

Emerson Santiago1, David F Moreno2, Murat Acar3.   

Abstract

Aging is a complex phenomenon of functional decay in a biological organism. Although the effects of aging are readily recognizable in a wide range of organisms, the cause(s) of aging are ill defined and poorly understood. Experimental methods on model organisms have driven significant insight into aging as a process, but have not provided a complete model of aging. Computational biology offers a unique opportunity to resolve this gap in our knowledge by generating extensive and testable models that can help us understand the fundamental nature of aging, identify the presence and characteristics of unaccounted aging factor(s), demonstrate the mechanics of particular factor(s) in driving aging, and understand the secondary effects of aging on biological function. In this review, we will address each of the above roles for computational biology in aging research. Concurrently, we will explore the different applications of computational biology to aging in single-celled versus multicellular organisms. Given the long history of computational biogerontological research on lower eukaryotes, we emphasize the key future goals of gradually integrating prior models into a holistic map of aging and translating successful models to higher-complexity organisms.
Copyright © 2021 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Aging; Aging factor; Computational biology; Lifespan; Mathematical modeling; Mortality; Network

Mesh:

Year:  2021        PMID: 34582969      PMCID: PMC8560568          DOI: 10.1016/j.exger.2021.111577

Source DB:  PubMed          Journal:  Exp Gerontol        ISSN: 0531-5565            Impact factor:   4.032


  103 in total

1.  Aging: a theory based on free radical and radiation chemistry.

Authors:  D HARMAN
Journal:  J Gerontol       Date:  1956-07

Review 2.  Mitochondria, oxidants, and aging.

Authors:  Robert S Balaban; Shino Nemoto; Toren Finkel
Journal:  Cell       Date:  2005-02-25       Impact factor: 41.582

3.  Aging in complex interdependency networks.

Authors:  Dervis C Vural; Greg Morrison; L Mahadevan
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2014-02-24

4.  The critical size is set at a single-cell level by growth rate to attain homeostasis and adaptation.

Authors:  Francisco Ferrezuelo; Neus Colomina; Alida Palmisano; Eloi Garí; Carme Gallego; Attila Csikász-Nagy; Martí Aldea
Journal:  Nat Commun       Date:  2012       Impact factor: 14.919

5.  A Glucose-Sensing Toggle Switch for Autonomous, High Productivity Genetic Control.

Authors:  William Bothfeld; Grace Kapov; Keith E J Tyo
Journal:  ACS Synth Biol       Date:  2017-03-30       Impact factor: 5.110

Review 6.  The hallmarks of aging.

Authors:  Carlos López-Otín; Maria A Blasco; Linda Partridge; Manuel Serrano; Guido Kroemer
Journal:  Cell       Date:  2013-06-06       Impact factor: 41.582

7.  Single cell analysis of yeast replicative aging using a new generation of microfluidic device.

Authors:  Yi Zhang; Chunxiong Luo; Ke Zou; Zhengwei Xie; Onn Brandman; Qi Ouyang; Hao Li
Journal:  PLoS One       Date:  2012-11-08       Impact factor: 3.240

8.  A microfluidic system for studying ageing and dynamic single-cell responses in budding yeast.

Authors:  Matthew M Crane; Ivan B N Clark; Elco Bakker; Stewart Smith; Peter S Swain
Journal:  PLoS One       Date:  2014-06-20       Impact factor: 3.240

Review 9.  Measuring and modeling interventions in aging.

Authors:  Nicholas Stroustrup
Journal:  Curr Opin Cell Biol       Date:  2018-08-10       Impact factor: 8.382

10.  Fundamental Characteristics of Single-Cell Aging in Diploid Yeast.

Authors:  Ethan A Sarnoski; Ruijie Song; Ege Ertekin; Noelle Koonce; Murat Acar
Journal:  iScience       Date:  2018-08-17
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  1 in total

1.  Multi-scale model suggests the trade-off between protein and ATP demand as a driver of metabolic changes during yeast replicative ageing.

Authors:  Barbara Schnitzer; Linnea Österberg; Iro Skopa; Marija Cvijovic
Journal:  PLoS Comput Biol       Date:  2022-07-07       Impact factor: 4.779

  1 in total

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