Literature DB >> 26438558

Backbone chemical shift assignments for Xanthomonas campestris peroxiredoxin Q in the reduced and oxidized states: a dramatic change in backbone dynamics.

Garry W Buchko1, Arden Perkins2, Derek Parsonage3, Leslie B Poole3, P Andrew Karplus4.   

Abstract

Peroxiredoxins (Prx) are ubiquitous enzymes that reduce peroxides as part of antioxidant defenses and redox signaling. While Prx catalytic activity and sensitivity to hyperoxidative inactivation depend on their dynamic properties, there are few examples where their dynamics has been characterized by NMR spectroscopy. Here, we provide a foundation for studies of the solution properties of peroxiredoxin Q from the plant pathogen Xanthomonas campestris (XcPrxQ) by assigning the observable (1)H(N), (15)N, (13)C(α), (13)C(β), and (13)C' chemical shifts for both the reduced (dithiol) and oxidized (disulfide) states. In the reduced state, most of the backbone amide resonances (149/152, 98 %) can be assigned in the XcPrxQ (1)H-(15)N HSQC spectrum. In contrast, a remarkable 51 % (77) of these amide resonances are not visible in the (1)H-(15)N HSQC spectrum of the disulfide state of the enzyme, indicating a substantial change in backbone dynamics associated with the formation of an intramolecular C48-C84 disulfide bond.

Entities:  

Keywords:  Conformational change; Drug design; Peroxidase; Plant diseases

Mesh:

Substances:

Year:  2015        PMID: 26438558      PMCID: PMC4789116          DOI: 10.1007/s12104-015-9637-8

Source DB:  PubMed          Journal:  Biomol NMR Assign        ISSN: 1874-270X            Impact factor:   0.746


  12 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-19       Impact factor: 11.205

Review 2.  Peroxiredoxin functions as a peroxidase and a regulator and sensor of local peroxides.

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Review 3.  Reconciling the chemistry and biology of reactive oxygen species.

Authors:  Christine C Winterbourn
Journal:  Nat Chem Biol       Date:  2008-05       Impact factor: 15.040

4.  Adenylate kinase motions during catalysis: an energetic counterweight balancing substrate binding.

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Journal:  Structure       Date:  1996-02-15       Impact factor: 5.006

5.  13C NMR chemical shifts can predict disulfide bond formation.

Authors:  D Sharma; K Rajarathnam
Journal:  J Biomol NMR       Date:  2000-10       Impact factor: 2.835

6.  Extraordinary μs-ms backbone dynamics in Arabidopsis thaliana peroxiredoxin Q.

Authors:  Jörgen Adén; Marcus Wallgren; Patrik Storm; Christoph F Weise; Alexander Christiansen; Wolfgang P Schröder; Christiane Funk; Magnus Wolf-Watz
Journal:  Biochim Biophys Acta       Date:  2011-07-21

7.  Interactions of human nucleotide excision repair protein XPA with DNA and RPA70 Delta C327: chemical shift mapping and 15N NMR relaxation studies.

Authors:  G W Buchko; G W Daughdrill; R de Lorimier; K Rao B; N G Isern; J M Lingbeck; J S Taylor; M S Wold; M Gochin; L D Spicer; D F Lowry; M A Kennedy
Journal:  Biochemistry       Date:  1999-11-16       Impact factor: 3.162

Review 8.  The Seattle Structural Genomics Center for Infectious Disease (SSGCID).

Authors:  P J Myler; R Stacy; L Stewart; B L Staker; W C Van Voorhis; G Varani; G W Buchko
Journal:  Infect Disord Drug Targets       Date:  2009-11

9.  Cysteine pK(a) values for the bacterial peroxiredoxin AhpC.

Authors:  Kimberly J Nelson; Derek Parsonage; Andrea Hall; P Andrew Karplus; Leslie B Poole
Journal:  Biochemistry       Date:  2008-12-02       Impact factor: 3.162

10.  Insights into the alkyl peroxide reduction pathway of Xanthomonas campestris bacterioferritin comigratory protein from the trapped intermediate-ligand complex structures.

Authors:  Shu-Ju Liao; Chao-Yu Yang; Ko-Hsin Chin; Andrew H-J Wang; Shan-Ho Chou
Journal:  J Mol Biol       Date:  2009-05-25       Impact factor: 5.469

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  5 in total

1.  Solution structure for an Encephalitozoon cuniculi adrenodoxin-like protein in the oxidized state.

Authors:  Shareef Shaheen; Kayleigh F Barrett; Sandhya Subramanian; Samuel L M Arnold; Joseph A Laureanti; Peter J Myler; Wesley C Van Voorhis; Garry W Buchko
Journal:  Protein Sci       Date:  2020-01-20       Impact factor: 6.725

2.  Peroxiredoxin Catalysis at Atomic Resolution.

Authors:  Arden Perkins; Derek Parsonage; Kimberly J Nelson; O Maduka Ogba; Paul Ha-Yeon Cheong; Leslie B Poole; P Andrew Karplus
Journal:  Structure       Date:  2016-09-01       Impact factor: 5.006

3.  Native state fluctuations in a peroxiredoxin active site match motions needed for catalysis.

Authors:  Aidan B Estelle; Patrick N Reardon; Seth H Pinckney; Leslie B Poole; Elisar Barbar; P Andrew Karplus
Journal:  Structure       Date:  2021-10-21       Impact factor: 5.006

4.  Solution NMR structures of oxidized and reduced Ehrlichia chaffeensis thioredoxin: NMR-invisible structure owing to backbone dynamics.

Authors:  Garry W Buchko; Stephen N Hewitt; Wesley C Van Voorhis; Peter J Myler
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2018-01-01       Impact factor: 1.056

5.  Controls of nature: Secondary, tertiary, and quaternary structure of the enamel protein amelogenin in solution and on hydroxyapatite.

Authors:  Wendy J Shaw; Barbara J Tarasevich; Garry W Buchko; Rajith M J Arachchige; Sarah D Burton
Journal:  J Struct Biol       Date:  2020-09-24       Impact factor: 2.867

  5 in total

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